Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s19.

Sample reads: 124,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3936.92 31689.15
2. MT-ATP6 MT-ATP6 3269.09 26313.64
3. MT-ND5 MT-ND5 2886.14 23231.19
4. MT-CYB MT-CYB 2458.04 19785.31
5. MT-ND4 MT-ND4 2174.72 17504.81
6. EEF1A EEF1A 2031.50 16352.00
7. gga-mir-3527 gga-mir-3527 1818.24 14635.42
8. GAPDH ENSGALG00000014442 1709.27 13758.30 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
9. MT-CO1 MT-CO1 1682.80 13545.23
10. MT-ND3 MT-ND3 1405.71 11314.87
11. MT-ND1 MT-ND1 1345.00 10826.21
12. gga-mir-3533 ENSGALG00000027736 1246.92 10036.74 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
13. PPIA ENSGALG00000028600 910.67 7330.19 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. RPL5 ENSGALG00000005922 709.86 5713.82 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
15. NME2 ENSGALG00000002932 661.60 5325.37 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. RPL8 ENSGALG00000016232 596.22 4799.11 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
17. RPL7A ENSGALG00000003197 585.32 4711.37 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
18. RPS3 ENSGALG00000017330 579.10 4661.31 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
19. RPL26 RPL26 557.30 4485.83
20. ENO1 ENSGALG00000002377 543.29 4373.06 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
21. RPL15 ENSGALG00000011290 543.29 4373.06 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. CIRBP ENSGALG00000030918 481.02 3871.84 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
23. RPS7 ENSGALG00000016392 477.91 3846.80 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
24. RPL7 ENSGALG00000035252 476.35 3834.25 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
25. RPL18A 468.57 3771.62 ribosomal protein L18a
26. EIF4G2 ENSGALG00000005587 467.01 3759.07 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
27. RPL31 ENSGALG00000016775 429.65 3458.35 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
28. RPL27A ENSGALG00000005948 420.31 3383.17 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
29. RPS4 RPS4 410.97 3307.99
30. MDK ENSGALG00000008367 403.19 3245.37 midkine [Source:NCBI gene;Acc:423196]
31. RPS23 ENSGALG00000015617 381.39 3069.89 ribosomal protein S23
32. RPS10 ENSGALG00000002813 375.17 3019.83 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
33. STMN1 ENSGALG00000001475 375.17 3019.83 stathmin 1 [Source:NCBI gene;Acc:396057]
34. TMSB4X ENSGALG00000026383 359.60 2894.50 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
35. RAN ENSGALG00000002569 351.82 2831.88 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
36. RPS6 ENSGALG00000015082 348.70 2806.76 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
37. RPS12 ENSGALG00000013990 344.03 2769.17 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
38. FKBP4 ENSGALG00000014331 339.36 2731.58 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
39. RPS16 ENSGALG00000026490 336.25 2706.55 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
40. RPS20 ENSGALG00000014432 326.91 2631.37 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
41. MT-ND2 MT-ND2 323.80 2606.34
42. RPSA 322.24 2593.78 ribosomal protein SA
43. HMGN5 ENSGALG00000007131 314.46 2531.16 high mobility group nucleosome binding domain 5, transcript variant X1
44. ENSGALG00000018384 ENSGALG00000018384 312.90 2518.60
45. RPS11 ENSGALG00000017299 312.90 2518.60 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
46. RPS27A ENSGALG00000036790 308.23 2481.01 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
47. EEF1B2 ENSGALG00000008590 305.11 2455.90 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
48. RPL27 ENSGALG00000002837 302.00 2430.87 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
49. RPS15 ENSGALG00000015195 302.00 2430.87 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
50. SLC25A6_1 ENSGALG00000016691 300.44 2418.31 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
51. H3-IX H3-IX 298.89 2405.83
52. RPL14 ENSGALG00000043379 298.89 2405.83 ribosomal protein L14
53. ENSGALG00000018386 ENSGALG00000018386 294.22 2368.24
54. RPS29 ENSGALG00000012229 294.22 2368.24 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
55. RPL32 ENSGALG00000027142 292.66 2355.69 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
56. ATP6V0C ENSGALG00000009229 286.43 2305.54 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
57. ENSGALG00000002696 ENSGALG00000002696 284.88 2293.06
58. RPL21 ENSGALG00000027035 281.76 2267.95 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
59. MIF ENSGALG00000006326 277.09 2230.36 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
60. ENSGALG00000028992 ENSGALG00000028992 273.98 2205.33
61. RPL23A ENSGALG00000003966 273.98 2205.33 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
62. ATP5G3 266.20 2142.70 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
63. EIF4EBP1 ENSGALG00000003205 266.20 2142.70 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
64. RPL13 ENSGALG00000006179 266.20 2142.70 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
65. RPL35A ENSGALG00000007611, ENSGALG00000041230 259.97 2092.56 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
66. SNRPG ENSGALG00000028409 259.97 2092.56 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
67. RPL36 ENSGALG00000000474 252.19 2029.93 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
68. NDUFB9 ENSGALG00000042242 250.63 2017.38 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
69. RPL23 ENSGALG00000001634 249.07 2004.82 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
70. RPL10A ENSGALG00000002644 247.52 1992.34 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
71. RPL29 ENSGALG00000026978 247.52 1992.34 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
72. RPS14 ENSGALG00000004588 247.52 1992.34 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
73. RPS24 ENSGALG00000004871 247.52 1992.34 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
74. KRT19 ENSGALG00000019719 242.85 1954.75 keratin 19 [Source:NCBI gene;Acc:395861]
75. TPT1 ENSGALG00000028872 241.29 1942.20 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
76. CRHOA CRHOA 238.18 1917.16
77. RPS15A ENSGALG00000006771 233.51 1879.57 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
78. ERH ENSGALG00000017384 228.84 1841.98 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
79. H2AFZ ENSGALG00000014023 228.84 1841.98 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
80. RPL6 ENSGALG00000004818 227.28 1829.43 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
81. EIF1 ENSGALG00000028517 217.94 1754.25 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
82. LDHB ENSGALG00000035836 217.94 1754.25 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
83. IGF2BP3 ENSGALG00000010961 210.16 1691.62 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
84. RPL37 ENSGALG00000014833 205.49 1654.03 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
85. HMGN2 HMGN2 199.26 1603.89
86. CDK1 ENSGALG00000003085 197.70 1591.33 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
87. RPL4 ENSGALG00000007711 194.59 1566.30 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
88. RPLP1 ENSGALG00000030878 193.03 1553.74 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
89. RPS21 ENSGALG00000005338 193.03 1553.74 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
90. RPL3 ENSGALG00000012172 191.48 1541.27 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
91. RPS8 ENSGALG00000010124 191.48 1541.27 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
92. RPS3A ENSGALG00000010077 188.36 1516.15 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
93. CNN3 ENSGALG00000005597 186.81 1503.68 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
94. RPL37A ENSGALG00000011472 185.25 1491.12 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
95. SNRPE ENSGALG00000000137 183.69 1478.56 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
96. HMGB1 ENSGALG00000042875 180.58 1453.53 high mobility group box 1 [Source:NCBI gene;Acc:395724]
97. LUM ENSGALG00000011271 180.58 1453.53 lumican [Source:NCBI gene;Acc:417891]
98. ANP32B ENSGALG00000037483 179.02 1440.97 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
99. HNRNPDL ENSGALG00000023199 179.02 1440.97 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
100. RPL38 ENSGALG00000001465 179.02 1440.97 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA