Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s11.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 6784.76 54613.24
2. MT-CO3 MT-CO3 5155.09 41495.38
3. MT-ND5 MT-ND5 4576.39 36837.19
4. MT-ND4 MT-ND4 2914.41 23459.25
5. gga-mir-3527 gga-mir-3527 2732.91 21998.28
6. MT-ND1 MT-ND1 2607.48 20988.65
7. MT-CYB MT-CYB 2459.24 19795.41
8. MT-CO1 MT-CO1 1975.56 15902.07
9. MT-ND3 MT-ND3 1925.20 15496.70
10. EEF1A EEF1A 1725.65 13890.45
11. gga-mir-3533 ENSGALG00000027736 1338.90 10777.34 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. GAPDH ENSGALG00000014442 1074.73 8650.93 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. PPIA ENSGALG00000028600 952.15 7664.24 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 791.56 6371.58 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 732.64 5897.31 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. RPS3 ENSGALG00000017330 569.20 4581.72 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
17. RPS23 ENSGALG00000015617 512.18 4122.74 ribosomal protein S23
18. RPL8 ENSGALG00000016232 507.43 4084.51 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. EIF4G2 ENSGALG00000005587 480.82 3870.31 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
20. RPL15 ENSGALG00000011290 436.16 3510.83 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
21. RPS10 ENSGALG00000002813 430.46 3464.94 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
22. RPL7A ENSGALG00000003197 424.76 3419.06 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
23. RPS7 ENSGALG00000016392 418.11 3365.53 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
24. RPL26 RPL26 417.16 3357.89
25. RPL7 ENSGALG00000035252 407.66 3281.42 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
26. RPS4 RPS4 405.76 3266.12
27. RPL18A 395.30 3181.93 ribosomal protein L18a
28. MDK ENSGALG00000008367 390.55 3143.69 midkine [Source:NCBI gene;Acc:423196]
29. MT-ND2 MT-ND2 388.65 3128.40
30. RPS27A ENSGALG00000036790 386.75 3113.11 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
31. RPL23 ENSGALG00000001634 385.80 3105.46 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
32. RPS15 ENSGALG00000015195 385.80 3105.46 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
33. RPL31 ENSGALG00000016775 381.05 3067.22 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
34. ENO1 ENSGALG00000002377 372.50 2998.40 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
35. RPL27A ENSGALG00000005948 366.80 2952.52 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
36. CIRBP ENSGALG00000030918 357.29 2875.97 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
37. RPS16 ENSGALG00000026490 344.94 2776.56 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
38. SNRPG ENSGALG00000028409 331.64 2669.50 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
39. ATP6V0C ENSGALG00000009229 322.13 2592.95 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
40. STMN1 ENSGALG00000001475 320.23 2577.66 stathmin 1 [Source:NCBI gene;Acc:396057]
41. RAN ENSGALG00000002569 319.28 2570.01 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
42. RPL36 ENSGALG00000000474 319.28 2570.01 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
43. RPS12 ENSGALG00000013990 316.43 2547.07 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
44. EEF1B2 ENSGALG00000008590 315.48 2539.42 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
45. RPS20 ENSGALG00000014432 313.58 2524.13 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
46. TMSB4X ENSGALG00000026383 307.88 2478.25 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
47. RPS29 ENSGALG00000012229 305.98 2462.96 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
48. RPL27 ENSGALG00000002837 300.28 2417.07 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
49. RPS24 ENSGALG00000004871 298.38 2401.78 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
50. RPL23A ENSGALG00000003966 295.53 2378.84 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
51. LDHB ENSGALG00000035836 290.78 2340.60 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
52. RPS11 ENSGALG00000017299 289.83 2332.96 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
53. RPL32 ENSGALG00000027142 283.17 2279.35 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
54. ENSGALG00000028992 ENSGALG00000028992 280.32 2256.41
55. H3-IX H3-IX 279.37 2248.76
56. ATP5G3 277.47 2233.47 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
57. RPS6 ENSGALG00000015082 276.52 2225.82 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
58. RPL29 ENSGALG00000026978 273.67 2202.88 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
59. FKBP4 ENSGALG00000014331 272.72 2195.23 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
60. RPL38 ENSGALG00000001465 271.77 2187.59 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
61. SLC25A6_1 ENSGALG00000016691 267.02 2149.35 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
62. RPL21 ENSGALG00000027035 259.42 2088.18 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
63. RPS15A ENSGALG00000006771 252.77 2034.65 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
64. RPL14 ENSGALG00000043379 251.82 2027.00 ribosomal protein L14
65. RPS21 ENSGALG00000005338 245.16 1973.39 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
66. RPSA 243.26 1958.10 ribosomal protein SA
67. EIF1 ENSGALG00000028517 234.71 1889.27 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
68. RPS14 ENSGALG00000004588 234.71 1889.27 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
69. RPL35A ENSGALG00000007611, ENSGALG00000041230 233.76 1881.63 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
70. RPL37A ENSGALG00000011472 225.21 1812.81 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
71. RPL6 ENSGALG00000004818 223.31 1797.51 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
72. H2AFZ ENSGALG00000014023 216.66 1743.98 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
73. HNRNPDL ENSGALG00000023199 215.71 1736.34 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
74. TPT1 ENSGALG00000028872 210.00 1690.37 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
75. BTF3L4 ENSGALG00000010570 209.05 1682.73 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
76. RPL13 ENSGALG00000006179 198.60 1598.61 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
77. NDUFB9 ENSGALG00000042242 197.65 1590.96 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
78. ERH ENSGALG00000017384 192.90 1552.73 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
79. CNN3 ENSGALG00000005597 190.05 1529.79 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
80. KRT19 ENSGALG00000019719 190.05 1529.79 keratin 19 [Source:NCBI gene;Acc:395861]
81. HNRNPA3 ENSGALG00000009250 189.10 1522.14 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
82. RPL12 ENSGALG00000008806 189.10 1522.14 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
83. RPL10A ENSGALG00000002644 188.15 1514.49 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
84. KPNA2 ENSGALG00000003584 184.35 1483.91 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
85. MIF ENSGALG00000006326 184.35 1483.91 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
86. RPLP1 ENSGALG00000030878 182.45 1468.61 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
87. SNRPE ENSGALG00000000137 181.50 1460.97 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
88. HMGN5 ENSGALG00000007131 180.55 1453.32 high mobility group nucleosome binding domain 5, transcript variant X1
89. TCEB3 ENSGALG00000034625 180.55 1453.32 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
90. CRHOA CRHOA 178.65 1438.03
91. HSPE1 ENSGALG00000009070 178.65 1438.03 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
92. RPL37 ENSGALG00000014833 178.65 1438.03 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
93. PRDX1 ENSGALG00000010243 176.75 1422.73 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
94. HMGB2 ENSGALG00000010745 175.80 1415.08 high mobility group box 2 [Source:NCBI gene;Acc:396482]
95. EIF4EBP1 ENSGALG00000003205 172.94 1392.06 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
96. RPS3A ENSGALG00000010077 167.24 1346.18 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
97. ENSGALG00000002696 ENSGALG00000002696 159.64 1285.01
98. CDK1 ENSGALG00000003085 155.84 1254.42 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
99. HMGN2 HMGN2 155.84 1254.42
100. RPL4 ENSGALG00000007711 155.84 1254.42 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA