Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s1.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 6518.08 52475.84
2. MT-ND5 MT-ND5 4668.79 37587.55
3. MT-CO3 MT-CO3 4135.57 33294.70
4. MT-CYB MT-CYB 2972.24 23928.95
5. MT-CO1 MT-CO1 2466.65 19858.54
6. MT-ND4 MT-ND4 2421.96 19498.75
7. gga-mir-3527 gga-mir-3527 2039.28 16417.86
8. MT-ND1 MT-ND1 2031.84 16357.96
9. gga-mir-3533 ENSGALG00000027736 1664.28 13398.81 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. EEF1A EEF1A 1536.22 12367.82
11. GAPDH ENSGALG00000014442 1148.04 9242.65 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. PPIA ENSGALG00000028600 975.79 7855.90 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
13. MT-ND3 MT-ND3 786.06 6328.42
14. NME2 ENSGALG00000002932 685.53 5519.07 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 593.62 4779.12 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. MDK ENSGALG00000008367 531.61 4279.89 midkine [Source:NCBI gene;Acc:423196]
17. RPL8 ENSGALG00000016232 452.88 3646.05 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
18. MT-ND2 MT-ND2 431.42 3473.28
19. RPL15 ENSGALG00000011290 422.72 3403.24 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
20. EIF4G2 ENSGALG00000005587 421.20 3391.00 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
21. RPS3 ENSGALG00000017330 418.50 3369.26 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
22. ENO1 ENSGALG00000002377 397.13 3197.22 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
23. RPL18A 393.66 3169.28 ribosomal protein L18a
24. ATP6V0C ENSGALG00000009229 388.17 3125.08 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
25. CIRBP ENSGALG00000030918 387.07 3116.23 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
26. RPL26 RPL26 373.90 3010.20
27. H3-IX H3-IX 366.12 2947.56
28. RPL7 ENSGALG00000035252 365.36 2941.44 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
29. TMSB4X ENSGALG00000026383 345.00 2777.53 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
30. RPL7A ENSGALG00000003197 338.58 2725.84 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. RPL23 ENSGALG00000001634 332.42 2676.25 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
32. RPS7 ENSGALG00000016392 326.50 2628.59 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
33. RAN ENSGALG00000002569 319.66 2573.52 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
34. RPS23 ENSGALG00000015617 312.14 2512.98 ribosomal protein S23
35. LDHB ENSGALG00000035836 310.96 2503.48 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
36. RPL27A ENSGALG00000005948 303.36 2442.29 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
37. ENSGALG00000018384 ENSGALG00000018384 293.64 2364.04
38. RPL31 ENSGALG00000016775 290.43 2338.20 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
39. STMN1 ENSGALG00000001475 287.73 2316.46 stathmin 1 [Source:NCBI gene;Acc:396057]
40. RPS16 ENSGALG00000026490 278.86 2245.05 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
41. RPS27A ENSGALG00000036790 278.61 2243.04 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
42. ANP32B ENSGALG00000037483 276.24 2223.96 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
43. RPL21 ENSGALG00000027035 276.24 2223.96 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
44. HMGN5 ENSGALG00000007131 269.74 2171.63 high mobility group nucleosome binding domain 5, transcript variant X1
45. RPS4 RPS4 267.45 2153.19
46. H2AFZ ENSGALG00000014023 266.53 2145.78 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
47. FKBP4 ENSGALG00000014331 262.39 2112.45 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
48. RPS6 ENSGALG00000015082 257.40 2072.28 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
49. ATP5G3 256.22 2062.78 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
50. RPS15 ENSGALG00000015195 252.42 2032.19 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
51. SNRPG ENSGALG00000028409 251.57 2025.34 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
52. EIF1 ENSGALG00000028517 247.77 1994.75 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
53. RPS29 ENSGALG00000012229 244.48 1968.26 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
54. RPS10 ENSGALG00000002813 243.29 1958.68 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
55. SLC25A6_1 ENSGALG00000016691 242.03 1948.54 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
56. EIF5A2 ENSGALG00000009309 237.38 1911.10 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
57. RPL36 ENSGALG00000000474 228.43 1839.05 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
58. RPS11 ENSGALG00000017299 228.26 1837.68 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
59. EEF1B2 ENSGALG00000008590 227.24 1829.47 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
60. RPS12 ENSGALG00000013990 223.78 1801.61 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
61. MIF ENSGALG00000006326 222.85 1794.12 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
62. RPL32 ENSGALG00000027142 220.65 1776.41 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
63. RPS20 ENSGALG00000014432 220.23 1773.03 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
64. MEIS2 ENSGALG00000039118 217.78 1753.31 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
65. RPS24 ENSGALG00000004871 212.54 1711.12 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
66. RPL4 ENSGALG00000007711 209.93 1690.11 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
67. RPL27 ENSGALG00000002837 209.50 1686.65 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
68. CRHOA CRHOA 205.96 1658.15
69. RPSA 204.77 1648.56 ribosomal protein SA
70. NONO ENSGALG00000005507 204.35 1645.18 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
71. NDUFB9 ENSGALG00000042242 202.58 1630.93 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
72. RPL23A ENSGALG00000003966 199.70 1607.75 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
73. HNRNPDL ENSGALG00000023199 199.03 1602.35 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
74. HMGB1 ENSGALG00000042875 198.77 1600.26 high mobility group box 1 [Source:NCBI gene;Acc:395724]
75. CDK1 ENSGALG00000003085 197.00 1586.01 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
76. EIF4EBP1 ENSGALG00000003205 197.00 1586.01 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
77. RPL6 ENSGALG00000004818 196.24 1579.89 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
78. ERH ENSGALG00000017384 194.13 1562.90 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
79. BTF3L4 ENSGALG00000010570 193.11 1554.69 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
80. RPL35A ENSGALG00000007611, ENSGALG00000041230 192.44 1549.30 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
81. ENSGALG00000028992 ENSGALG00000028992 188.64 1518.71
82. ENSGALG00000018386 ENSGALG00000018386 187.96 1513.23
83. RPL14 ENSGALG00000043379 187.96 1513.23 ribosomal protein L14
84. HMGB2 ENSGALG00000010745 184.58 1486.02 high mobility group box 2 [Source:NCBI gene;Acc:396482]
85. RPL29 ENSGALG00000026978 179.60 1445.93 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
86. IGF2BP3 ENSGALG00000010961 176.89 1424.11 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
87. HMGN2 HMGN2 175.21 1410.58
88. RPS14 ENSGALG00000004588 174.36 1403.74 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
89. HNRNPA3 ENSGALG00000009250 172.33 1387.40 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
90. SNRPE ENSGALG00000000137 171.83 1383.37 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
91. TCF12 ENSGALG00000004304 169.88 1367.67 transcription factor 12 [Source:NCBI gene;Acc:396334]
92. RPS15A ENSGALG00000006771 168.02 1352.70 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
93. SET ENSGALG00000004701 166.08 1337.08 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
94. ENSGALG00000002696 ENSGALG00000002696 163.89 1319.45
95. TPT1 ENSGALG00000028872 162.53 1308.50 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
96. RPL10A ENSGALG00000002644 162.45 1307.85 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
97. RPLP1 ENSGALG00000030878 162.45 1307.85 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
98. KPNA2 ENSGALG00000003584 161.44 1299.72 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
99. RPL13 ENSGALG00000006179 158.99 1280.00 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
100. RPL38 ENSGALG00000001465 158.99 1280.00 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA