Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s56.

Sample reads: 124,229. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 4241.31 34144.38
2. MT-CO3 MT-CO3 3487.62 28076.85
3. MT-ND5 MT-ND5 3369.92 27129.31
4. MT-CYB MT-CYB 1846.02 14861.26
5. EEF1A EEF1A 1817.11 14628.52
6. PPIA ENSGALG00000028600 1461.95 11769.33 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
7. GAPDH ENSGALG00000014442 1379.35 11104.36 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
8. MT-ND4 MT-ND4 1350.44 10871.63
9. MT-ND3 MT-ND3 1348.38 10855.04
10. gga-mir-3527 gga-mir-3527 1278.17 10289.82
11. gga-mir-3533 ENSGALG00000027736 1274.04 10256.57 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. MT-ND1 MT-ND1 1228.62 9890.92
13. NME2 ENSGALG00000002932 1115.05 8976.63 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. RPS23 ENSGALG00000015617 881.71 7098.15 ribosomal protein S23
15. MDK ENSGALG00000008367 840.41 6765.66 midkine [Source:NCBI gene;Acc:423196]
16. RPS6 ENSGALG00000015082 749.56 6034.28 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
17. MT-CO1 MT-CO1 741.30 5967.79
18. RPL8 ENSGALG00000016232 578.17 4654.52 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. CRABP-I ENSGALG00000003193 536.87 4322.04 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
20. RPL26 RPL26 532.74 4288.79
21. RPL5 ENSGALG00000005922 532.74 4288.79 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
22. RPS7 ENSGALG00000016392 499.71 4022.88 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
23. RPL23 ENSGALG00000001634 497.64 4006.22 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
24. EIF4G2 ENSGALG00000005587 481.12 3873.22 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
25. LDHB ENSGALG00000035836 476.99 3839.98 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
26. RPL15 ENSGALG00000011290 474.93 3823.39 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
27. RAN ENSGALG00000002569 437.76 3524.16 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
28. RPS27A ENSGALG00000036790 429.50 3457.66 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
29. TMSB4X ENSGALG00000026383 429.50 3457.66 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
30. RPL18A 421.24 3391.16 ribosomal protein L18a
31. STMN1 ENSGALG00000001475 412.98 3324.67 stathmin 1 [Source:NCBI gene;Acc:396057]
32. RPL7A ENSGALG00000003197 410.92 3308.08 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
33. RPS4 RPS4 410.92 3308.08
34. RPL36 ENSGALG00000000474 400.59 3224.92 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
35. RPL27A ENSGALG00000005948 398.53 3208.34 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
36. ENSGALG00000002696 ENSGALG00000002696 396.46 3191.67
37. CIRBP ENSGALG00000030918 386.14 3108.59 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
38. RPL7 ENSGALG00000035252 384.07 3091.93 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
39. RPL31 ENSGALG00000016775 382.01 3075.35 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
40. ENO1 ENSGALG00000002377 369.62 2975.60 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
41. RPS20 ENSGALG00000014432 361.36 2909.10 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
42. RPL37 ENSGALG00000014833 351.03 2825.94 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
43. FKBP4 ENSGALG00000014331 344.84 2776.11 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
44. ATP5G3 334.51 2692.95 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
45. EEF1B2 ENSGALG00000008590 334.51 2692.95 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
46. EIF1 ENSGALG00000028517 328.32 2643.12 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
47. RPS16 ENSGALG00000026490 324.19 2609.87 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
48. RPS29 ENSGALG00000012229 317.99 2559.96 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
49. ATP6V0C ENSGALG00000009229 313.86 2526.71 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
50. RPS10 ENSGALG00000002813 309.74 2493.54 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
51. RPL27 ENSGALG00000002837 305.61 2460.29 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
52. RPLP1 ENSGALG00000030878 305.61 2460.29 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
53. RPS3 ENSGALG00000017330 299.41 2410.38 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
54. SNRPG ENSGALG00000028409 299.41 2410.38 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
55. RPL14 ENSGALG00000043379 297.35 2393.80 ribosomal protein L14
56. H3-IX H3-IX 295.28 2377.13
57. MT-ND2 MT-ND2 289.09 2327.30
58. RPS8 ENSGALG00000010124 289.09 2327.30 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
59. RPS14 ENSGALG00000004588 287.02 2310.63 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
60. ENSGALG00000028992 ENSGALG00000028992 282.89 2277.39
61. H2AFZ ENSGALG00000014023 280.83 2260.80 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
62. TXN ENSGALG00000015704 268.44 2161.06 thioredoxin [Source:NCBI gene;Acc:396437]
63. SLC25A6_1 ENSGALG00000016691 266.37 2144.39 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
64. RPL35A ENSGALG00000007611, ENSGALG00000041230 262.24 2111.15 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
65. KPNA2 ENSGALG00000003584 260.18 2094.56 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
66. CRHOA CRHOA 251.92 2028.06
67. HMGN5 ENSGALG00000007131 251.92 2028.06 high mobility group nucleosome binding domain 5, transcript variant X1
68. RPS12 ENSGALG00000013990 249.85 2011.40 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
69. RPL38 ENSGALG00000001465 245.72 1978.15 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
70. RPS11 ENSGALG00000017299 239.53 1928.32 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
71. RPS24 ENSGALG00000004871 237.46 1911.66 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
72. RPL10A ENSGALG00000002644 235.40 1895.07 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
73. TCF12 ENSGALG00000004304 231.27 1861.82 transcription factor 12 [Source:NCBI gene;Acc:396334]
74. HSPE1 ENSGALG00000009070 227.14 1828.58 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
75. EIF4A2 ENSGALG00000008684 225.07 1811.91 eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
76. SNRPE ENSGALG00000000137 223.01 1795.33 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
77. RPS21 ENSGALG00000005338 220.94 1778.66 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
78. HMGN2 HMGN2 218.88 1762.08
79. HSPA8 ENSGALG00000006512 218.88 1762.08 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
80. IGF2BP3 ENSGALG00000010961 218.88 1762.08 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
81. TPT1 ENSGALG00000028872 218.88 1762.08 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
82. RPSA 216.81 1745.41 ribosomal protein SA
83. BTF3L4 ENSGALG00000010570 214.75 1728.83 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
84. RPL23A ENSGALG00000003966 212.68 1712.17 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
85. RPS15A ENSGALG00000006771 212.68 1712.17 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
86. EIF3F ENSGALG00000005326 208.55 1678.92 eukaryotic translation initiation factor 3 subunit F
87. RPL21 ENSGALG00000027035 208.55 1678.92 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
88. RPL29 ENSGALG00000026978 208.55 1678.92 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
89. MIF ENSGALG00000006326 206.49 1662.33 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
90. RPL3 ENSGALG00000012172 202.36 1629.09 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
91. LUM ENSGALG00000011271 198.23 1595.84 lumican [Source:NCBI gene;Acc:417891]
92. ATP6V1G1 ENSGALG00000007190 192.04 1546.00 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
93. ENSGALG00000018384 ENSGALG00000018384 192.04 1546.00
94. RPLP2 ENSGALG00000034811 192.04 1546.00 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
95. COX7C ENSGALG00000027963 189.97 1529.34 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
96. HNRNPDL ENSGALG00000023199 189.97 1529.34 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
97. RPL13 ENSGALG00000006179 187.91 1512.76 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
98. RPS15 ENSGALG00000015195 183.78 1479.51 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
99. HMGB1 ENSGALG00000042875 179.65 1446.26 high mobility group box 1 [Source:NCBI gene;Acc:395724]
100. RPLP0 ENSGALG00000023294 179.65 1446.26 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA