Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s55.

Sample reads: 124,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ND5 MT-ND5 3963.37 31904.07
2. MT-ATP6 MT-ATP6 3820.97 30757.79
3. MT-CO3 MT-CO3 3103.06 24978.80
4. EEF1A EEF1A 2141.88 17241.56
5. MT-CYB MT-CYB 1952.02 15713.24
6. MT-ND4 MT-ND4 1768.09 14232.65
7. gga-mir-3533 ENSGALG00000027736 1340.90 10793.89 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. GAPDH ENSGALG00000014442 1287.50 10364.03 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
9. gga-mir-3527 gga-mir-3527 1269.70 10220.75
10. PPIA ENSGALG00000028600 1067.97 8596.87 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
11. MT-ND3 MT-ND3 937.44 7546.14
12. MT-ND1 MT-ND1 860.31 6925.27
13. NME2 ENSGALG00000002932 777.25 6256.65 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. MT-CO1 MT-CO1 741.65 5970.08
15. RPS6 ENSGALG00000015082 706.05 5683.51 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
16. RPS23 ENSGALG00000015617 676.38 5444.68 ribosomal protein S23
17. RPS7 ENSGALG00000016392 611.12 4919.35 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
18. ENSGALG00000018384 ENSGALG00000018384 563.65 4537.23
19. EIF4G2 ENSGALG00000005587 551.79 4441.76 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
20. RPL8 ENSGALG00000016232 528.05 4250.66 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. STMN1 ENSGALG00000001475 480.59 3868.62 stathmin 1 [Source:NCBI gene;Acc:396057]
22. MDK ENSGALG00000008367 474.65 3820.81 midkine [Source:NCBI gene;Acc:423196]
23. ATP6V0C ENSGALG00000009229 468.72 3773.07 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
24. TMSB4X ENSGALG00000026383 468.72 3773.07 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
25. ENO1 ENSGALG00000002377 439.06 3534.32 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
26. ENSGALG00000002696 ENSGALG00000002696 439.06 3534.32
27. RPL5 ENSGALG00000005922 421.26 3391.03 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
28. RPL7A ENSGALG00000003197 421.26 3391.03 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
29. RPL23 ENSGALG00000001634 415.32 3343.21 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
30. RPL15 ENSGALG00000011290 391.59 3152.19 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
31. RPL26 RPL26 367.86 2961.17
32. RPL7 ENSGALG00000035252 361.92 2913.36 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
33. RAN ENSGALG00000002569 350.06 2817.89 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
34. RPS27A ENSGALG00000036790 350.06 2817.89 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
35. RPS20 ENSGALG00000014432 344.12 2770.07 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
36. RPL31 ENSGALG00000016775 338.19 2722.34 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
37. SLC25A6_1 ENSGALG00000016691 332.26 2674.60 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
38. CIRBP ENSGALG00000030918 320.39 2579.05 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
39. MT-ND2 MT-ND2 320.39 2579.05
40. RPL27A ENSGALG00000005948 314.46 2531.32 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
41. RPL14 ENSGALG00000043379 302.59 2435.77 ribosomal protein L14
42. RPS12 ENSGALG00000013990 302.59 2435.77 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
43. TCF12 ENSGALG00000004304 302.59 2435.77 transcription factor 12 [Source:NCBI gene;Acc:396334]
44. TXN ENSGALG00000015704 302.59 2435.77 thioredoxin [Source:NCBI gene;Acc:396437]
45. RPS10 ENSGALG00000002813 296.66 2388.03 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
46. IGF2BP3 ENSGALG00000010961 290.73 2340.30 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
47. KPNA2 ENSGALG00000003584 290.73 2340.30 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
48. EEF1B2 ENSGALG00000008590 278.86 2244.75 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
49. EIF1 ENSGALG00000028517 278.86 2244.75 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
50. RPL36 ENSGALG00000000474 278.86 2244.75 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
51. EIF5A2 ENSGALG00000009309 272.93 2197.01 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
52. ENSGALG00000028992 ENSGALG00000028992 272.93 2197.01
53. RPL18A 272.93 2197.01 ribosomal protein L18a
54. FKBP4 ENSGALG00000014331 255.13 2053.73 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
55. H3-IX H3-IX 255.13 2053.73
56. RPSA 255.13 2053.73 ribosomal protein SA
57. RPS16 ENSGALG00000026490 249.19 2005.91 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
58. ANP32B ENSGALG00000037483 243.26 1958.18 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
59. RPL27 ENSGALG00000002837 243.26 1958.18 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
60. RPS3 ENSGALG00000017330 243.26 1958.18 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
61. RPS4 RPS4 243.26 1958.18
62. RPL3 ENSGALG00000012172 237.33 1910.44 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
63. RPL37 ENSGALG00000014833 237.33 1910.44 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
64. RPS24 ENSGALG00000004871 237.33 1910.44 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
65. RPS8 ENSGALG00000010124 237.33 1910.44 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
66. ATP5G3 231.39 1862.63 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
67. H2AFZ ENSGALG00000014023 231.39 1862.63 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
68. LUM ENSGALG00000011271 231.39 1862.63 lumican [Source:NCBI gene;Acc:417891]
69. RPLP1 ENSGALG00000030878 231.39 1862.63 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
70. RPL29 ENSGALG00000026978 225.46 1814.89 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
71. TPT1 ENSGALG00000028872 225.46 1814.89 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
72. CALM CALM 219.53 1767.16
73. CRHOA CRHOA 219.53 1767.16
74. RPL12 ENSGALG00000008806 219.53 1767.16 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
75. RPL13 ENSGALG00000006179 219.53 1767.16 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
76. RPL6 ENSGALG00000004818 219.53 1767.16 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
77. SNRPG ENSGALG00000028409 219.53 1767.16 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
78. CNN3 ENSGALG00000005597 213.59 1719.34 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
79. HMGB2 ENSGALG00000010745 207.66 1671.61 high mobility group box 2 [Source:NCBI gene;Acc:396482]
80. MEIS2 ENSGALG00000039118 207.66 1671.61 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
81. NDUFB9 ENSGALG00000042242 207.66 1671.61 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
82. RPL32 ENSGALG00000027142 207.66 1671.61 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
83. YWHAZ ENSGALG00000031387 207.66 1671.61 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
84. HMGB1 ENSGALG00000042875 201.73 1623.87 high mobility group box 1 [Source:NCBI gene;Acc:395724]
85. LDHB ENSGALG00000035836 201.73 1623.87 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
86. RPL21 ENSGALG00000027035 201.73 1623.87 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
87. RPL35A ENSGALG00000007611, ENSGALG00000041230 201.73 1623.87 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
88. RPS14 ENSGALG00000004588 201.73 1623.87 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
89. RPS15A ENSGALG00000006771 201.73 1623.87 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
90. RPS29 ENSGALG00000012229 201.73 1623.87 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
91. CDC42 ENSGALG00000004796 195.80 1576.14 cell division cycle 42 [Source:NCBI gene;Acc:395917]
92. HMGN2 HMGN2 195.80 1576.14
93. KRT19 ENSGALG00000019719 189.86 1528.32 keratin 19 [Source:NCBI gene;Acc:395861]
94. RPL38 ENSGALG00000001465 189.86 1528.32 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
95. CCNB2 ENSGALG00000004161 183.93 1480.59 cyclin B2 [Source:NCBI gene;Acc:415400]
96. EEF1D 183.93 1480.59 eukaryotic translation elongation factor 1 delta, transcript variant X13
97. EIF4A2 ENSGALG00000008684 183.93 1480.59 eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
98. ERH ENSGALG00000017384 183.93 1480.59 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
99. ARF4 ENSGALG00000005622 172.06 1385.04 ADP ribosylation factor 4 [Source:HGNC Symbol;Acc:HGNC:655]
100. HSPE1 ENSGALG00000009070 172.06 1385.04 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA