Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s54.

Sample reads: 124,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4067.77 32743.32
2. MT-ATP6 MT-ATP6 3599.44 28973.52
3. MT-ND5 MT-ND5 3463.44 27878.80
4. EEF1A EEF1A 1944.92 15655.54
5. MT-CYB MT-CYB 1889.70 15211.05
6. GAPDH ENSGALG00000014442 1513.40 12182.04 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. MT-ND4 MT-ND4 1366.15 10996.76
8. gga-mir-3533 ENSGALG00000027736 1231.17 9910.24 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. gga-mir-3527 gga-mir-3527 1227.08 9877.32
10. PPIA ENSGALG00000028600 1221.97 9836.19 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
11. NME2 ENSGALG00000002932 1095.17 8815.52 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
12. MT-ND3 MT-ND3 1025.64 8255.84
13. MT-ND1 MT-ND1 997.00 8025.30
14. RPS23 ENSGALG00000015617 857.93 6905.87 ribosomal protein S23
15. MDK ENSGALG00000008367 701.48 5646.53 midkine [Source:NCBI gene;Acc:423196]
16. MT-CO1 MT-CO1 680.01 5473.71
17. RPS6 ENSGALG00000015082 660.58 5317.31 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
18. RPL8 ENSGALG00000016232 577.75 4650.57 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. RPL5 ENSGALG00000005922 538.89 4337.77 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
20. EIF4G2 ENSGALG00000005587 524.58 4222.58 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
21. RPS7 ENSGALG00000016392 514.35 4140.24 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
22. RPL23 ENSGALG00000001634 510.26 4107.31 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
23. CRABP-I ENSGALG00000003193 499.01 4016.76 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
24. RPL26 RPL26 489.81 3942.70
25. LDHB ENSGALG00000035836 470.38 3786.30 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
26. RPL15 ENSGALG00000011290 453.00 3646.40 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
27. ENO1 ENSGALG00000002377 448.91 3613.48 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
28. RPS27A ENSGALG00000036790 434.59 3498.21 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
29. RPL18A 426.41 3432.37 ribosomal protein L18a
30. ENSGALG00000002696 ENSGALG00000002696 414.14 3333.60
31. RAN ENSGALG00000002569 403.91 3251.25 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
32. ATP6V0C ENSGALG00000009229 391.64 3152.49 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
33. RPL7A ENSGALG00000003197 391.64 3152.49 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
34. RPL31 ENSGALG00000016775 381.42 3070.22 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
35. STMN1 ENSGALG00000001475 372.21 2996.09 stathmin 1 [Source:NCBI gene;Acc:396057]
36. TMSB4X ENSGALG00000026383 372.21 2996.09 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
37. RPL7 ENSGALG00000035252 353.81 2847.98 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
38. RPL27A ENSGALG00000005948 350.74 2823.27 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
39. FKBP4 ENSGALG00000014331 344.61 2773.92 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
40. RPS20 ENSGALG00000014432 343.58 2765.63 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
41. CIRBP ENSGALG00000030918 342.56 2757.42 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
42. RPS16 ENSGALG00000026490 338.47 2724.50 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
43. RPS4 RPS4 334.38 2691.58
44. ATP5G3 333.36 2683.37 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
45. RPL35A ENSGALG00000007611, ENSGALG00000041230 325.18 2617.52 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
46. EIF1 ENSGALG00000028517 312.91 2518.75 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
47. RPS10 ENSGALG00000002813 305.75 2461.12 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
48. ENSGALG00000018384 ENSGALG00000018384 304.73 2452.91
49. TCF12 ENSGALG00000004304 304.73 2452.91 transcription factor 12 [Source:NCBI gene;Acc:396334]
50. RPL27 ENSGALG00000002837 303.70 2444.62 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
51. MT-ND2 MT-ND2 291.43 2345.85
52. RPLP1 ENSGALG00000030878 287.34 2312.93 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
53. H2AFZ ENSGALG00000014023 283.25 2280.01 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
54. SLC25A6_1 ENSGALG00000016691 283.25 2280.01 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
55. H3-IX H3-IX 280.18 2255.30
56. RPS3 ENSGALG00000017330 279.16 2247.09 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
57. RPL14 ENSGALG00000043379 278.14 2238.87 ribosomal protein L14
58. RPS8 ENSGALG00000010124 277.12 2230.66 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
59. RPS12 ENSGALG00000013990 276.09 2222.37 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
60. EEF1B2 ENSGALG00000008590 274.05 2205.95 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
61. RPS29 ENSGALG00000012229 274.05 2205.95 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
62. RPL36 ENSGALG00000000474 273.03 2197.74 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
63. SNRPE ENSGALG00000000137 273.03 2197.74 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
64. RPS14 ENSGALG00000004588 272.00 2189.45 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
65. ENSGALG00000028992 ENSGALG00000028992 264.84 2131.82
66. RPL37 ENSGALG00000014833 259.73 2090.68 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
67. SNRPG ENSGALG00000028409 259.73 2090.68 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
68. CRHOA CRHOA 248.48 2000.13
69. RPL21 ENSGALG00000027035 241.33 1942.57 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
70. RPL38 ENSGALG00000001465 241.33 1942.57 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
71. RPS21 ENSGALG00000005338 239.28 1926.07 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
72. KPNA2 ENSGALG00000003584 236.21 1901.36 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
73. RPL32 ENSGALG00000027142 235.19 1893.15 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
74. HSPE1 ENSGALG00000009070 224.96 1810.80 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
75. HMGN5 ENSGALG00000007131 216.78 1744.96 high mobility group nucleosome binding domain 5, transcript variant X1
76. HNRNPDL ENSGALG00000023199 216.78 1744.96 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
77. RPS24 ENSGALG00000004871 214.74 1728.54 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
78. BTF3L4 ENSGALG00000010570 213.72 1720.33 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
79. TPT1 ENSGALG00000028872 213.72 1720.33 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
80. RPS15A ENSGALG00000006771 212.69 1712.04 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
81. RPSA 212.69 1712.04 ribosomal protein SA
82. TXN ENSGALG00000015704 212.69 1712.04 thioredoxin [Source:NCBI gene;Acc:396437]
83. NDUFB9 ENSGALG00000042242 209.63 1687.41 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
84. RPL3 ENSGALG00000012172 205.54 1654.48 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
85. MIF ENSGALG00000006326 203.49 1637.98 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
86. RPS11 ENSGALG00000017299 203.49 1637.98 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
87. RPL13 ENSGALG00000006179 201.45 1621.56 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
88. NONO ENSGALG00000005507 200.42 1613.27 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
89. RPL29 ENSGALG00000026978 200.42 1613.27 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
90. HMGB1 ENSGALG00000042875 196.33 1580.35 high mobility group box 1 [Source:NCBI gene;Acc:395724]
91. YWHAZ ENSGALG00000031387 192.24 1547.43 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
92. CDK1 ENSGALG00000003085 190.20 1531.01 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
93. HSPA8 ENSGALG00000006512 190.20 1531.01 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
94. RPL6 ENSGALG00000004818 189.17 1522.71 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
95. EIF4A2 ENSGALG00000008684 188.15 1514.50 eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
96. RPL23A ENSGALG00000003966 187.13 1506.29 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
97. HMGN2 HMGN2 183.04 1473.37
98. ATP6V1G1 ENSGALG00000007190 179.97 1448.66 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
99. CCT6 CCT6 177.93 1432.24
100. RPL10A ENSGALG00000002644 174.86 1407.53 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA