Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s51.

Sample reads: 124,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4009.81 32278.76
2. MT-ATP6 MT-ATP6 3612.53 29080.67
3. MT-ND5 MT-ND5 3161.08 25446.52
4. EEF1A EEF1A 2113.71 17015.25
5. MT-CYB MT-CYB 1928.61 15525.21
6. GAPDH ENSGALG00000014442 1588.21 12785.01 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. gga-mir-3533 ENSGALG00000027736 1495.21 12036.36 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. PPIA ENSGALG00000028600 1319.15 10619.09 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
9. MT-ND4 MT-ND4 1211.70 9754.12
10. gga-mir-3527 gga-mir-3527 1148.50 9245.36
11. NME2 ENSGALG00000002932 1114.19 8969.17 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
12. MT-CO1 MT-CO1 808.10 6505.16
13. MT-ND1 MT-ND1 779.21 6272.60
14. RPS6 ENSGALG00000015082 708.78 5705.64 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
15. MT-ND3 MT-ND3 706.98 5691.15
16. RPS23 ENSGALG00000015617 650.09 5233.19 ribosomal protein S23
17. MDK ENSGALG00000008367 637.45 5131.44 midkine [Source:NCBI gene;Acc:423196]
18. EIF4G2 ENSGALG00000005587 600.43 4833.43 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
19. RPL5 ENSGALG00000005922 558.90 4499.12 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
20. RPS7 ENSGALG00000016392 529.10 4259.23 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
21. RPL26 RPL26 528.20 4251.98
22. RPL8 ENSGALG00000016232 528.20 4251.98 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
23. ATP6V0C ENSGALG00000009229 470.41 3786.78 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
24. RPS27A ENSGALG00000036790 458.68 3692.35 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
25. RAN ENSGALG00000002569 420.75 3387.01 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
26. RPL15 ENSGALG00000011290 409.02 3292.59 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
27. RPL23 ENSGALG00000001634 408.11 3285.26 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
28. RPL7A ENSGALG00000003197 403.60 3248.96 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
29. STMN1 ENSGALG00000001475 395.47 3183.51 stathmin 1 [Source:NCBI gene;Acc:396057]
30. ENO1 ENSGALG00000002377 390.06 3139.96 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
31. CIRBP ENSGALG00000030918 388.25 3125.39 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
32. TMSB4X ENSGALG00000026383 385.54 3103.58 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
33. RPL27A ENSGALG00000005948 379.22 3052.70 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
34. EIF1 ENSGALG00000028517 361.16 2907.32 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
35. RPS4 RPS4 349.43 2812.89
36. RPS16 ENSGALG00000026490 340.40 2740.20 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
37. ENSGALG00000002696 ENSGALG00000002696 336.78 2711.06
38. H2AFZ ENSGALG00000014023 321.43 2587.49 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
39. RPL18A 319.63 2573.00 ribosomal protein L18a
40. LDHB ENSGALG00000035836 317.82 2558.43 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
41. EEF1B2 ENSGALG00000008590 306.09 2464.01 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
42. RPL31 ENSGALG00000016775 305.18 2456.68 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
43. H3-IX H3-IX 304.28 2449.44
44. RPL7 ENSGALG00000035252 299.77 2413.13 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
45. RPS3 ENSGALG00000017330 290.74 2340.44 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
46. ATP5G3 288.93 2325.87 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
47. SNRPG ENSGALG00000028409 284.42 2289.57 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
48. RPS20 ENSGALG00000014432 282.61 2275.00 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
49. SLC25A6_1 ENSGALG00000016691 273.58 2202.30 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
50. FKBP4 ENSGALG00000014331 271.78 2187.81 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
51. KPNA2 ENSGALG00000003584 264.55 2129.61 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
52. TCF12 ENSGALG00000004304 263.65 2122.37 transcription factor 12 [Source:NCBI gene;Acc:396334]
53. RPLP1 ENSGALG00000030878 260.94 2100.55 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
54. RPL37 ENSGALG00000014833 255.52 2056.92 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
55. RPS8 ENSGALG00000010124 245.59 1976.99 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
56. CRABP-I ENSGALG00000003193 244.69 1969.74 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
57. HMGN5 ENSGALG00000007131 242.88 1955.17 high mobility group nucleosome binding domain 5, transcript variant X1
58. RPS12 ENSGALG00000013990 242.88 1955.17 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
59. RPS24 ENSGALG00000004871 240.17 1933.36 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
60. RPS10 ENSGALG00000002813 239.27 1926.11 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
61. RPL38 ENSGALG00000001465 235.66 1897.05 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
62. RPL14 ENSGALG00000043379 234.76 1889.81 ribosomal protein L14
63. RPL21 ENSGALG00000027035 233.85 1882.48 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
64. CRHOA CRHOA 231.14 1860.66
65. TXN ENSGALG00000015704 229.34 1846.17 thioredoxin [Source:NCBI gene;Acc:396437]
66. RPL35A ENSGALG00000007611, ENSGALG00000041230 228.44 1838.93 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
67. RPL36 ENSGALG00000000474 228.44 1838.93 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
68. ENSGALG00000028992 ENSGALG00000028992 227.53 1831.60
69. HNRNPDL ENSGALG00000023199 226.63 1824.36 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
70. BTF3L4 ENSGALG00000010570 222.12 1788.05 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
71. RPL3 ENSGALG00000012172 221.21 1780.73 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
72. SNRPE ENSGALG00000000137 218.50 1758.91 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
73. RPSA 214.89 1729.85 ribosomal protein SA
74. RPL27 ENSGALG00000002837 213.99 1722.61 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
75. RPS11 ENSGALG00000017299 213.99 1722.61 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
76. ANP32B ENSGALG00000037483 210.38 1693.55 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
77. YWHAZ ENSGALG00000031387 208.57 1678.98 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
78. HMGB2 ENSGALG00000010745 204.96 1649.92 high mobility group box 2 [Source:NCBI gene;Acc:396482]
79. PGK1 ENSGALG00000007936 203.15 1635.35 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
80. MT-ND2 MT-ND2 202.25 1628.10
81. RPS14 ENSGALG00000004588 202.25 1628.10 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
82. RPLP2 ENSGALG00000034811 200.45 1613.61 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
83. RPL32 ENSGALG00000027142 199.54 1606.29 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
84. ALDH1A2 ENSGALG00000004270 196.83 1584.47 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
85. RPS29 ENSGALG00000012229 196.83 1584.47 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
86. HSPE1 ENSGALG00000009070 195.03 1569.98 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
87. MIF ENSGALG00000006326 195.03 1569.98 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
88. EIF3F ENSGALG00000005326 193.22 1555.41 eukaryotic translation initiation factor 3 subunit F
89. NDUFB9 ENSGALG00000042242 192.32 1548.17 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
90. HMGN2 HMGN2 190.51 1533.60
91. NONO ENSGALG00000005507 185.10 1490.05 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
92. RPL29 ENSGALG00000026978 183.29 1475.47 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
93. HMGB1 ENSGALG00000042875 182.39 1468.23 high mobility group box 1 [Source:NCBI gene;Acc:395724]
94. RPL10A ENSGALG00000002644 181.48 1460.90 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
95. TPT1 ENSGALG00000028872 180.58 1453.66 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
96. HNRNPA3 ENSGALG00000009250 177.87 1431.84 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
97. RPL12 ENSGALG00000008806 177.87 1431.84 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
98. RPS21 ENSGALG00000005338 176.07 1417.35 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
99. ANXA1 ENSGALG00000015148 175.16 1410.03 annexin A1 [Source:NCBI gene;Acc:404271]
100. ARF4 ENSGALG00000005622 175.16 1410.03 ADP ribosylation factor 4 [Source:HGNC Symbol;Acc:HGNC:655]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA