Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s49.

Sample reads: 124,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 4323.07 34801.55
2. MT-CO3 MT-CO3 3983.67 32069.32
3. MT-ND5 MT-ND5 3542.52 28517.97
4. EEF1A EEF1A 2135.62 17192.16
5. MT-CYB MT-CYB 2114.13 17019.16
6. GAPDH ENSGALG00000014442 1591.45 12811.48 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. MT-ND4 MT-ND4 1429.02 11503.89
8. gga-mir-3533 ENSGALG00000027736 1271.64 10236.95 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. gga-mir-3527 gga-mir-3527 1168.62 9407.62
10. PPIA ENSGALG00000028600 1070.02 8613.87 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
11. NME2 ENSGALG00000002932 1028.31 8278.09 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
12. MT-ND1 MT-ND1 868.41 6990.87
13. MT-CO1 MT-CO1 839.97 6761.92
14. RPS23 ENSGALG00000015617 721.14 5805.32 ribosomal protein S23
15. MT-ND3 MT-ND3 709.14 5708.71
16. RPS6 ENSGALG00000015082 679.43 5469.54 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
17. MDK ENSGALG00000008367 652.25 5250.74 midkine [Source:NCBI gene;Acc:423196]
18. EIF4G2 ENSGALG00000005587 613.07 4935.33 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
19. TMSB4X ENSGALG00000026383 531.54 4279.00 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
20. RPL8 ENSGALG00000016232 494.25 3978.81 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. ATP6V0C ENSGALG00000009229 478.45 3851.62 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
22. RPS7 ENSGALG00000016392 474.65 3821.02 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
23. RPL5 ENSGALG00000005922 465.17 3744.71 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
24. RPL26 RPL26 429.78 3459.81
25. STMN1 ENSGALG00000001475 425.99 3429.30 stathmin 1 [Source:NCBI gene;Acc:396057]
26. RPL15 ENSGALG00000011290 405.13 3261.38 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
27. FKBP4 ENSGALG00000014331 399.44 3215.57 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
28. ENO1 ENSGALG00000002377 392.49 3159.62 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
29. RPS27A ENSGALG00000036790 389.96 3139.25 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
30. CIRBP ENSGALG00000030918 386.17 3108.74 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
31. RPL7A ENSGALG00000003197 369.74 2976.48 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
32. RAN ENSGALG00000002569 357.73 2879.80 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
33. ENSGALG00000018384 ENSGALG00000018384 343.19 2762.75
34. RPL23 ENSGALG00000001634 343.19 2762.75 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
35. ENSGALG00000002696 ENSGALG00000002696 321.70 2589.75
36. RPL18A 319.17 2569.38 ribosomal protein L18a
37. LDHB ENSGALG00000035836 305.27 2457.48 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
38. EEF1B2 ENSGALG00000008590 298.95 2406.61 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
39. RPS12 ENSGALG00000013990 298.95 2406.61 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
40. RPS4 RPS4 297.69 2396.46
41. RPL31 ENSGALG00000016775 293.26 2360.80 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
42. RPS16 ENSGALG00000026490 293.26 2360.80 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
43. H3-IX H3-IX 287.57 2314.99
44. RPL7 ENSGALG00000035252 281.88 2269.19 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
45. SLC25A6_1 ENSGALG00000016691 278.09 2238.68 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
46. RPL27A ENSGALG00000005948 276.20 2223.46 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
47. TCF12 ENSGALG00000004304 274.93 2213.24 transcription factor 12 [Source:NCBI gene;Acc:396334]
48. MEIS2 ENSGALG00000039118 272.40 2192.87 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
49. MT-ND2 MT-ND2 271.14 2182.73
50. EIF1 ENSGALG00000028517 268.61 2162.36 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
51. CRABP-I ENSGALG00000003193 266.08 2142.00 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
52. H2AFZ ENSGALG00000014023 262.92 2116.56 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
53. ATP5G3 261.03 2101.34 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
54. RPS20 ENSGALG00000014432 258.50 2080.98 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
55. SNRPG ENSGALG00000028409 257.24 2070.83 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
56. TXN ENSGALG00000015704 257.24 2070.83 thioredoxin [Source:NCBI gene;Acc:396437]
57. SNRPE ENSGALG00000000137 251.55 2025.03 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
58. RPS3 ENSGALG00000017330 249.65 2009.73 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
59. HMGN5 ENSGALG00000007131 238.27 1918.12 high mobility group nucleosome binding domain 5, transcript variant X1
60. EIF5A2 ENSGALG00000009309 234.48 1887.61 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
61. HNRNPDL ENSGALG00000023199 233.22 1877.47 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
62. ALDH1A2 ENSGALG00000004270 231.32 1862.17 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
63. RPL37 ENSGALG00000014833 231.32 1862.17 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
64. CRHOA CRHOA 225.00 1811.29
65. RPL14 ENSGALG00000043379 224.37 1806.22 ribosomal protein L14
66. RPLP1 ENSGALG00000030878 223.74 1801.15 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
67. KPNA2 ENSGALG00000003584 219.31 1765.49 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
68. RPL36 ENSGALG00000000474 219.31 1765.49 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
69. RPL3 ENSGALG00000012172 218.68 1760.42 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
70. RPL21 ENSGALG00000027035 218.05 1755.34 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
71. RPS10 ENSGALG00000002813 214.26 1724.83 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
72. RPL35A ENSGALG00000007611, ENSGALG00000041230 209.20 1684.10 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
73. YWHAZ ENSGALG00000031387 209.20 1684.10 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
74. ENSGALG00000028992 ENSGALG00000028992 205.41 1653.59
75. IGF2BP3 ENSGALG00000010961 205.41 1653.59 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
76. RPS24 ENSGALG00000004871 205.41 1653.59 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
77. CALM CALM 204.78 1648.52
78. BTF3L4 ENSGALG00000010570 203.51 1638.29 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
79. RPS14 ENSGALG00000004588 203.51 1638.29 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
80. RPL27 ENSGALG00000002837 202.88 1633.22 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
81. RPS8 ENSGALG00000010124 201.62 1623.08 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
82. HMGB2 ENSGALG00000010745 198.46 1597.64 high mobility group box 2 [Source:NCBI gene;Acc:396482]
83. ANXA1 ENSGALG00000015148 197.82 1592.49 annexin A1 [Source:NCBI gene;Acc:404271]
84. NONO ENSGALG00000005507 197.82 1592.49 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
85. ANP32B ENSGALG00000037483 197.19 1587.42 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
86. NDUFB9 ENSGALG00000042242 195.93 1577.27 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
87. RPL38 ENSGALG00000001465 195.93 1577.27 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
88. RPSA 195.30 1572.20 ribosomal protein SA
89. HMGB1 ENSGALG00000042875 193.40 1556.91 high mobility group box 1 [Source:NCBI gene;Acc:395724]
90. CCT6 CCT6 186.45 1500.96
91. RPL10A ENSGALG00000002644 183.92 1480.59 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
92. HNRNPA3 ENSGALG00000009250 182.66 1470.45 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
93. RPL32 ENSGALG00000027142 182.02 1465.30 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
94. RPS29 ENSGALG00000012229 181.39 1460.22 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
95. HSPA8 ENSGALG00000006512 179.50 1445.01 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
96. HSPE1 ENSGALG00000009070 176.34 1419.57 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
97. RPL29 ENSGALG00000026978 175.07 1409.35 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
98. HMGN2 HMGN2 171.91 1383.91
99. CDK1 ENSGALG00000003085 170.65 1373.77 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
100. EIF4A2 ENSGALG00000008684 170.02 1368.69 eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA