Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s46.

Sample reads: 124,244. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4068.37 32748.74
2. MT-ATP6 MT-ATP6 3660.14 29462.65
3. MT-ND5 MT-ND5 3387.28 27266.24
4. EEF1A EEF1A 2232.37 17969.68
5. MT-CYB MT-CYB 2113.04 17009.12
6. MT-ND4 MT-ND4 1766.91 14222.91
7. GAPDH ENSGALG00000014442 1662.24 13380.36 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
8. gga-mir-3527 gga-mir-3527 1302.16 10481.86
9. gga-mir-3533 ENSGALG00000027736 1277.04 10279.66 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. PPIA ENSGALG00000028600 1229.58 9897.62 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
11. NME2 ENSGALG00000002932 1029.30 8285.45 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
12. MT-ND1 MT-ND1 1007.67 8111.34
13. MT-ND3 MT-ND3 993.02 7993.41
14. RPS23 ENSGALG00000015617 856.94 6898.02 ribosomal protein S23
15. MT-CO1 MT-CO1 786.46 6330.69
16. RPS6 ENSGALG00000015082 694.34 5589.16 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
17. MDK ENSGALG00000008367 651.08 5240.93 midkine [Source:NCBI gene;Acc:423196]
18. RPL5 ENSGALG00000005922 571.53 4600.59 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
19. RPS7 ENSGALG00000016392 568.04 4572.49 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
20. EIF4G2 ENSGALG00000005587 549.20 4420.84 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
21. RPL23 ENSGALG00000001634 518.49 4173.64 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
22. RPL8 ENSGALG00000016232 509.42 4100.63 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
23. ENO1 ENSGALG00000002377 506.63 4078.17 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
24. RPL26 RPL26 504.53 4061.26
25. RPL15 ENSGALG00000011290 459.17 3696.13 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
26. RPL7A ENSGALG00000003197 454.29 3656.85 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
27. CRABP-I ENSGALG00000003193 438.94 3533.29 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
28. STMN1 ENSGALG00000001475 415.91 3347.91 stathmin 1 [Source:NCBI gene;Acc:396057]
29. RPL27A ENSGALG00000005948 414.51 3336.64 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
30. RAN ENSGALG00000002569 413.12 3325.45 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
31. RPS4 RPS4 406.84 3274.90
32. ENSGALG00000002696 ENSGALG00000002696 406.14 3269.26
33. TMSB4X ENSGALG00000026383 403.35 3246.80 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
34. CIRBP ENSGALG00000030918 398.46 3207.44 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
35. ATP6V0C ENSGALG00000009229 394.28 3173.79 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
36. RPL7 ENSGALG00000035252 391.48 3151.26 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
37. RPS27A ENSGALG00000036790 390.09 3140.07 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
38. FKBP4 ENSGALG00000014331 386.60 3111.97 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
39. LDHB ENSGALG00000035836 385.90 3106.34 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
40. RPL18A 365.66 2943.42 ribosomal protein L18a
41. ATP5G3 350.31 2819.85 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
42. RPL31 ENSGALG00000016775 348.22 2803.03 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
43. RPS16 ENSGALG00000026490 332.87 2679.47 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
44. RPS3 ENSGALG00000017330 324.49 2612.01 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
45. SLC25A6_1 ENSGALG00000016691 301.46 2426.63 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
46. RPS10 ENSGALG00000002813 293.79 2364.89 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
47. H3-IX H3-IX 292.39 2353.62
48. RPL35A ENSGALG00000007611, ENSGALG00000041230 291.69 2347.99 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
49. RPS20 ENSGALG00000014432 286.81 2308.70 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
50. KPNA2 ENSGALG00000003584 282.62 2274.98 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
51. EEF1B2 ENSGALG00000008590 277.74 2235.69 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
52. RPS12 ENSGALG00000013990 277.04 2230.06 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
53. SNRPG ENSGALG00000028409 274.95 2213.24 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
54. TCF12 ENSGALG00000004304 267.27 2151.42 transcription factor 12 [Source:NCBI gene;Acc:396334]
55. RPLP1 ENSGALG00000030878 266.57 2145.78 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
56. RPS24 ENSGALG00000004871 266.57 2145.78 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
57. EIF1 ENSGALG00000028517 265.18 2134.59 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
58. RPS14 ENSGALG00000004588 263.78 2123.32 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
59. RPL27 ENSGALG00000002837 261.69 2106.50 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
60. RPL36 ENSGALG00000000474 256.80 2067.14 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
61. H2AFZ ENSGALG00000014023 251.92 2027.85 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
62. RPL37 ENSGALG00000014833 251.92 2027.85 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
63. RPL14 ENSGALG00000043379 249.82 2010.95 ribosomal protein L14
64. CRHOA CRHOA 247.73 1994.13
65. RPS8 ENSGALG00000010124 242.85 1954.84 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
66. RPL38 ENSGALG00000001465 242.15 1949.21 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
67. RPL21 ENSGALG00000027035 240.75 1937.94 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
68. RPS29 ENSGALG00000012229 237.26 1909.85 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
69. MT-ND2 MT-ND2 235.17 1893.02
70. HNRNPDL ENSGALG00000023199 225.40 1814.38 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
71. RPS11 ENSGALG00000017299 225.40 1814.38 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
72. BTF3L4 ENSGALG00000010570 224.00 1803.11 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
73. ENSGALG00000028992 ENSGALG00000028992 223.31 1797.56
74. HMGN5 ENSGALG00000007131 217.72 1752.56 high mobility group nucleosome binding domain 5, transcript variant X1
75. TXN ENSGALG00000015704 217.72 1752.56 thioredoxin [Source:NCBI gene;Acc:396437]
76. RPL32 ENSGALG00000027142 217.03 1747.00 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
77. SNRPE ENSGALG00000000137 217.03 1747.00 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
78. NDUFB9 ENSGALG00000042242 214.93 1730.10 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
79. RPL10A ENSGALG00000002644 214.93 1730.10 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
80. HSPE1 ENSGALG00000009070 213.54 1718.91 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
81. HSPA8 ENSGALG00000006512 212.14 1707.64 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
82. PGK1 ENSGALG00000007936 210.75 1696.45 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
83. RPS15A ENSGALG00000006771 207.95 1673.91 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
84. EIF4A2 ENSGALG00000008684 207.26 1668.36 eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
85. MIF ENSGALG00000006326 205.86 1657.09 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
86. RPSA 199.58 1606.54 ribosomal protein SA
87. ALDH1A2 ENSGALG00000004270 198.88 1600.90 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
88. YWHAZ ENSGALG00000031387 193.30 1555.99 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
89. RPL13 ENSGALG00000006179 191.90 1544.72 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
90. CDK1 ENSGALG00000003085 190.51 1533.53 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
91. RPS15 ENSGALG00000015195 188.42 1516.70 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
92. RPL3 ENSGALG00000012172 187.72 1511.07 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
93. RPL29 ENSGALG00000026978 187.02 1505.44 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
94. RPL23A ENSGALG00000003966 185.62 1494.17 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
95. ATP6V1G1 ENSGALG00000007190 181.44 1460.52 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
96. RPS21 ENSGALG00000005338 180.74 1454.88 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
97. HMGN2 HMGN2 180.04 1449.25
98. IGF2BP3 ENSGALG00000010961 180.04 1449.25 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
99. CCT6 CCT6 178.65 1438.06
100. ERH ENSGALG00000017384 177.25 1426.79 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA