Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s29.

Sample reads: 124,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 5173.43 41642.16
2. MT-CO3 MT-CO3 3578.25 28802.18
3. MT-ND5 MT-ND5 3412.47 27467.78
4. MT-CYB MT-CYB 2243.25 18056.45
5. EEF1A EEF1A 1963.24 15802.58
6. GAPDH ENSGALG00000014442 1716.55 13816.92 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. MT-ND4 MT-ND4 1461.92 11767.34
8. PPIA ENSGALG00000028600 1340.56 10790.48 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
9. MT-ND1 MT-ND1 1285.03 10343.51
10. gga-mir-3527 gga-mir-3527 1258.85 10132.78
11. RPS23 ENSGALG00000015617 856.69 6895.70 ribosomal protein S23
12. gga-mir-3533 ENSGALG00000027736 851.13 6850.95 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
13. MT-CO1 MT-CO1 793.23 6384.90
14. NME2 ENSGALG00000002932 727.39 5854.93 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. MT-ND3 MT-ND3 708.35 5701.68
16. ENO1 ENSGALG00000002377 620.30 4992.94 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
17. EIF4G2 ENSGALG00000005587 594.92 4788.65 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
18. RPS6 ENSGALG00000015082 567.95 4571.56 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
19. TMSB4X ENSGALG00000026383 522.74 4207.66 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
20. RPL5 ENSGALG00000005922 515.60 4150.19 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
21. RPL8 ENSGALG00000016232 512.43 4124.67 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
22. RPL15 ENSGALG00000011290 478.32 3850.11 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
23. LDHB ENSGALG00000035836 462.45 3722.37 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
24. RPS7 ENSGALG00000016392 461.66 3716.01 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
25. CIRBP ENSGALG00000030918 455.31 3664.90 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
26. STMN1 ENSGALG00000001475 433.90 3492.56 stathmin 1 [Source:NCBI gene;Acc:396057]
27. RPL18A 413.27 3326.51 ribosomal protein L18a
28. RPL26 RPL26 412.48 3320.15
29. ATP6V0C ENSGALG00000009229 411.69 3313.79 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
30. RPL7A ENSGALG00000003197 394.23 3173.25 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. ENSGALG00000002696 ENSGALG00000002696 391.06 3147.73
32. RPL31 ENSGALG00000016775 387.89 3122.22 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
33. RPS27A ENSGALG00000036790 382.34 3077.55 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
34. RAN ENSGALG00000002569 375.99 3026.43 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
35. RPS4 RPS4 372.02 2994.48
36. RPL23 ENSGALG00000001634 356.95 2873.18 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
37. MDK ENSGALG00000008367 355.37 2860.46 midkine [Source:NCBI gene;Acc:423196]
38. EEF1B2 ENSGALG00000008590 341.09 2745.51 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
39. RPL7 ENSGALG00000035252 319.67 2573.10 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
40. RPS3 ENSGALG00000017330 302.22 2432.64 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
41. MT-ND2 MT-ND2 300.63 2419.84
42. SLC25A6_1 ENSGALG00000016691 298.25 2400.68 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
43. H2AFZ ENSGALG00000014023 294.29 2368.81 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
44. FKBP4 ENSGALG00000014331 292.70 2356.01 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
45. RPS12 ENSGALG00000013990 287.15 2311.34 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
46. KPNA2 ENSGALG00000003584 274.46 2209.19 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
47. RPL27A ENSGALG00000005948 274.46 2209.19 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
48. RPS10 ENSGALG00000002813 273.66 2202.75 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
49. HMGN5 ENSGALG00000007131 269.70 2170.88 high mobility group nucleosome binding domain 5, transcript variant X1
50. RPS16 ENSGALG00000026490 267.32 2151.72 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
51. MIF ENSGALG00000006326 264.94 2132.56 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
52. RPL14 ENSGALG00000043379 257.80 2075.09 ribosomal protein L14
53. H3-IX H3-IX 257.01 2068.73
54. ATP5G3 255.42 2055.94 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
55. HNRNPA3 ENSGALG00000009250 246.69 1985.67 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
56. EIF1 ENSGALG00000028517 245.90 1979.31 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
57. RPS20 ENSGALG00000014432 241.14 1940.99 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
58. RPL35A ENSGALG00000007611, ENSGALG00000041230 237.18 1909.12 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
59. SNRPG ENSGALG00000028409 237.18 1909.12 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
60. IGF2BP3 ENSGALG00000010961 236.38 1902.68 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
61. RPL36 ENSGALG00000000474 236.38 1902.68 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
62. TXN ENSGALG00000015704 234.80 1889.96 thioredoxin [Source:NCBI gene;Acc:396437]
63. ANP32B ENSGALG00000037483 234.00 1883.52 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
64. RPL37 ENSGALG00000014833 234.00 1883.52 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
65. RPS14 ENSGALG00000004588 233.21 1877.16 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
66. RPS8 ENSGALG00000010124 233.21 1877.16 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
67. RPL27 ENSGALG00000002837 229.24 1845.21 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
68. RPLP1 ENSGALG00000030878 229.24 1845.21 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
69. CRABP-I ENSGALG00000003193 226.86 1826.05 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
70. SNRPE ENSGALG00000000137 225.28 1813.33 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
71. RPS24 ENSGALG00000004871 223.69 1800.53 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
72. HNRNPDL ENSGALG00000023199 218.93 1762.22 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
73. PGK1 ENSGALG00000007936 218.93 1762.22 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
74. EIF5A2 ENSGALG00000009309 218.14 1755.86 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
75. HSPE1 ENSGALG00000009070 218.14 1755.86 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
76. RPS29 ENSGALG00000012229 217.34 1749.42 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
77. HMGB2 ENSGALG00000010745 211.79 1704.75 high mobility group box 2 [Source:NCBI gene;Acc:396482]
78. RPL21 ENSGALG00000027035 203.86 1640.92 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
79. TCF12 ENSGALG00000004304 203.86 1640.92 transcription factor 12 [Source:NCBI gene;Acc:396334]
80. HMGN2 HMGN2 201.48 1621.76
81. RPSA 190.37 1532.33 ribosomal protein SA
82. ENSGALG00000018386 ENSGALG00000018386 188.00 1513.26
83. NONO ENSGALG00000005507 184.82 1487.66 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
84. RPL32 ENSGALG00000027142 184.03 1481.30 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
85. RPS11 ENSGALG00000017299 184.03 1481.30 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
86. ENSGALG00000028992 ENSGALG00000028992 182.44 1468.50
87. NDUFB9 ENSGALG00000042242 182.44 1468.50 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
88. RPS15A ENSGALG00000006771 182.44 1468.50 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
89. RPL10A ENSGALG00000002644 181.65 1462.14 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
90. CCT6 CCT6 180.86 1455.78
91. HMGB1 ENSGALG00000042875 180.86 1455.78 high mobility group box 1 [Source:NCBI gene;Acc:395724]
92. RPL38 ENSGALG00000001465 180.06 1449.35 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
93. CRHOA CRHOA 178.48 1436.63
94. ATP6V1G1 ENSGALG00000007190 177.68 1430.19 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
95. RPL23A ENSGALG00000003966 177.68 1430.19 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
96. ENSGALG00000018384 ENSGALG00000018384 175.30 1411.03
97. RPL29 ENSGALG00000026978 173.72 1398.31 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
98. RPL3 ENSGALG00000012172 172.92 1391.87 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
99. RPL6 ENSGALG00000004818 168.96 1360.00 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
100. TPT1 ENSGALG00000028872 168.96 1360.00 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA