Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s27.

Sample reads: 124,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 4642.54 37369.19
2. MT-ND5 MT-ND5 3466.55 27903.29
3. MT-CO3 MT-CO3 3386.94 27262.49
4. GAPDH ENSGALG00000014442 1981.21 15947.35 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
5. EEF1A EEF1A 1975.15 15898.57
6. MT-CYB MT-CYB 1876.58 15105.15
7. PPIA ENSGALG00000028600 1430.75 11516.53 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
8. gga-mir-3533 ENSGALG00000027736 1293.51 10411.85 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. gga-mir-3527 gga-mir-3527 1283.66 10332.56
10. MT-ND4 MT-ND4 1278.35 10289.82
11. MT-ND1 MT-ND1 1118.37 9002.09
12. NME2 ENSGALG00000002932 987.19 7946.19 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
13. RPS23 ENSGALG00000015617 826.45 6652.34 ribosomal protein S23
14. MT-CO1 MT-CO1 726.37 5846.77
15. MT-ND3 MT-ND3 655.10 5273.09
16. ENO1 ENSGALG00000002377 640.69 5157.10 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
17. TMSB4X ENSGALG00000026383 605.81 4876.35 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
18. RPS6 ENSGALG00000015082 592.16 4766.47 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
19. EIF4G2 ENSGALG00000005587 562.59 4528.45 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
20. RPL5 ENSGALG00000005922 533.02 4290.44 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
21. RPS7 ENSGALG00000016392 518.62 4174.53 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
22. RPL15 ENSGALG00000011290 489.05 3936.51 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
23. RPL8 ENSGALG00000016232 486.02 3912.12 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
24. STMN1 ENSGALG00000001475 470.09 3783.89 stathmin 1 [Source:NCBI gene;Acc:396057]
25. CIRBP ENSGALG00000030918 458.72 3692.37 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
26. ENSGALG00000002696 ENSGALG00000002696 426.87 3436.00
27. RPL26 RPL26 406.40 3271.23
28. RPL7 ENSGALG00000035252 395.79 3185.83 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
29. RPS27A ENSGALG00000036790 392.75 3161.36 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
30. LDHB ENSGALG00000035836 392.00 3155.32 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
31. RPL18A 391.24 3149.21 ribosomal protein L18a
32. MDK ENSGALG00000008367 380.62 3063.72 midkine [Source:NCBI gene;Acc:423196]
33. RPL7A ENSGALG00000003197 376.07 3027.10 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
34. RPL27A ENSGALG00000005948 367.73 2959.97 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
35. RAN ENSGALG00000002569 361.67 2911.19 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
36. RPS12 ENSGALG00000013990 353.33 2844.06 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
37. EIF1 ENSGALG00000028517 348.78 2807.43 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
38. RPL31 ENSGALG00000016775 346.50 2789.08 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
39. ATP6V0C ENSGALG00000009229 341.20 2746.42 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
40. RPS20 ENSGALG00000014432 329.06 2648.70 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
41. FKBP4 ENSGALG00000014331 325.27 2618.20 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
42. H2AFZ ENSGALG00000014023 310.11 2496.17 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
43. ENSGALG00000018384 ENSGALG00000018384 307.83 2477.82
44. RPS3 ENSGALG00000017330 304.80 2453.43 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
45. RPLP1 ENSGALG00000030878 297.22 2392.41 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
46. RPS4 RPS4 294.95 2374.14
47. EEF1B2 ENSGALG00000008590 288.12 2319.16 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
48. RPS16 ENSGALG00000026490 287.36 2313.05 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
49. HMGN5 ENSGALG00000007131 285.09 2294.77 high mobility group nucleosome binding domain 5, transcript variant X1
50. MT-ND2 MT-ND2 285.09 2294.77
51. RPL23 ENSGALG00000001634 283.57 2282.54 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
52. RPS11 ENSGALG00000017299 281.30 2264.27 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
53. ATP5G3 277.51 2233.76 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
54. H3-IX H3-IX 276.75 2227.64
55. MIF ENSGALG00000006326 275.23 2215.41 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
56. RPL35A ENSGALG00000007611, ENSGALG00000041230 273.72 2203.25 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
57. RPS10 ENSGALG00000002813 269.92 2172.67 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
58. RPS14 ENSGALG00000004588 269.17 2166.63 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
59. KPNA2 ENSGALG00000003584 266.89 2148.28 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
60. CRABP-I ENSGALG00000003193 266.13 2142.16 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
61. RPL27 ENSGALG00000002837 266.13 2142.16 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
62. SLC25A6_1 ENSGALG00000016691 260.83 2099.50 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
63. SNRPE ENSGALG00000000137 260.07 2093.38 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
64. RPL14 ENSGALG00000043379 250.97 2020.13 ribosomal protein L14
65. ANP32B ENSGALG00000037483 244.14 1965.16 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
66. PGK1 ENSGALG00000007936 241.87 1946.88 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
67. SNRPG ENSGALG00000028409 240.35 1934.65 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
68. CRHOA CRHOA 235.80 1898.02
69. RPS8 ENSGALG00000010124 235.80 1898.02 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
70. RPS24 ENSGALG00000004871 233.53 1879.75 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
71. RPL21 ENSGALG00000027035 228.22 1837.01 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
72. RPL32 ENSGALG00000027142 227.46 1830.89 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
73. RPL38 ENSGALG00000001465 227.46 1830.89 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
74. RPL37 ENSGALG00000014833 214.57 1727.14 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
75. HMGN2 HMGN2 212.30 1708.87
76. RPS15A ENSGALG00000006771 212.30 1708.87 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
77. TXN ENSGALG00000015704 210.78 1696.63 thioredoxin [Source:NCBI gene;Acc:396437]
78. IGF2BP3 ENSGALG00000010961 209.27 1684.48 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
79. EIF5A2 ENSGALG00000009309 203.20 1635.62 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
80. HNRNPA3 ENSGALG00000009250 200.17 1611.23 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
81. NDUFB9 ENSGALG00000042242 200.17 1611.23 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
82. HSPE1 ENSGALG00000009070 198.65 1598.99 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
83. HNRNPDL ENSGALG00000023199 195.62 1574.60 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
84. RPS29 ENSGALG00000012229 195.62 1574.60 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
85. RPSA 195.62 1574.60 ribosomal protein SA
86. BTF3L4 ENSGALG00000010570 194.86 1568.49 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
87. ENSGALG00000028992 ENSGALG00000028992 194.86 1568.49
88. HSPA8 ENSGALG00000006512 193.34 1556.25 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
89. HMGB2 ENSGALG00000010745 191.07 1537.98 high mobility group box 2 [Source:NCBI gene;Acc:396482]
90. RPL23A ENSGALG00000003966 189.55 1525.74 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
91. RPL13 ENSGALG00000006179 188.80 1519.71 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
92. RPL3 ENSGALG00000012172 188.80 1519.71 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
93. YWHAZ ENSGALG00000031387 188.80 1519.71 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
94. RPL36 ENSGALG00000000474 188.04 1513.59 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
95. RPL10A ENSGALG00000002644 185.00 1489.12 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
96. NONO ENSGALG00000005507 183.49 1476.97 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
97. RPL29 ENSGALG00000026978 181.97 1464.73 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
98. RPL6 ENSGALG00000004818 181.21 1458.61 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
99. TCF12 ENSGALG00000004304 181.21 1458.61 transcription factor 12 [Source:NCBI gene;Acc:396334]
100. RPLP0 ENSGALG00000023294 179.70 1446.46 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA