Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s25.

Sample reads: 124,234. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 5187.95 41760.28
2. MT-ND5 MT-ND5 3665.70 29506.97
3. MT-CO3 MT-CO3 3574.41 28772.13
4. EEF1A EEF1A 2026.36 16311.14
5. MT-CYB MT-CYB 1843.77 14841.38
6. GAPDH ENSGALG00000014442 1819.95 14649.64 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. MT-ND4 MT-ND4 1373.40 11055.15
8. PPIA ENSGALG00000028600 1351.57 10879.43 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
9. MT-ND1 MT-ND1 1222.56 9840.97
10. gga-mir-3533 ENSGALG00000027736 1105.47 8898.45 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. NME2 ENSGALG00000002932 1018.14 8195.49 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
12. gga-mir-3527 gga-mir-3527 956.62 7700.29
13. MT-CO1 MT-CO1 938.75 7556.45
14. RPS23 ENSGALG00000015617 875.24 7045.22 ribosomal protein S23
15. ENO1 ENSGALG00000002377 724.41 5831.12 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
16. MT-ND3 MT-ND3 720.44 5799.16
17. RPS6 ENSGALG00000015082 647.01 5208.09 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
18. TMSB4X ENSGALG00000026383 617.24 4968.46 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
19. EIF4G2 ENSGALG00000005587 569.60 4584.98 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
20. RPL15 ENSGALG00000011290 498.15 4009.85 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
21. RPL26 RPL26 492.20 3961.95
22. RPL27A ENSGALG00000005948 490.22 3946.01 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
23. ENSGALG00000002696 ENSGALG00000002696 486.25 3914.06
24. RPS7 ENSGALG00000016392 484.26 3898.04 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
25. STMN1 ENSGALG00000001475 458.46 3690.36 stathmin 1 [Source:NCBI gene;Acc:396057]
26. RPL8 ENSGALG00000016232 446.55 3594.49 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
27. RPL23 ENSGALG00000001634 428.69 3450.73 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
28. ATP6V0C ENSGALG00000009229 422.74 3402.84 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
29. CIRBP ENSGALG00000030918 410.83 3306.97 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
30. LDHB ENSGALG00000035836 408.84 3290.95 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
31. RPS27A ENSGALG00000036790 400.91 3227.12 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
32. RPL18A 394.95 3179.14 ribosomal protein L18a
33. RPL5 ENSGALG00000005922 390.98 3147.18 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
34. RPL7A ENSGALG00000003197 381.06 3067.33 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
35. RPS16 ENSGALG00000026490 381.06 3067.33 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
36. RPL31 ENSGALG00000016775 379.07 3051.32 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
37. RPS4 RPS4 377.09 3035.38
38. H2AFZ ENSGALG00000014023 369.15 2971.46 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
39. RPL7 ENSGALG00000035252 365.18 2939.51 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
40. RAN ENSGALG00000002569 363.20 2923.57 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
41. SNRPG ENSGALG00000028409 359.23 2891.61 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
42. MDK ENSGALG00000008367 353.27 2843.64 midkine [Source:NCBI gene;Acc:423196]
43. EIF1 ENSGALG00000028517 333.43 2683.94 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
44. SLC25A6_1 ENSGALG00000016691 331.44 2667.92 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
45. RPS11 ENSGALG00000017299 323.50 2604.01 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
46. MIF ENSGALG00000006326 315.56 2540.09 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
47. RPL14 ENSGALG00000043379 303.66 2444.30 ribosomal protein L14
48. RPS20 ENSGALG00000014432 293.73 2364.37 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
49. RPS10 ENSGALG00000002813 289.76 2332.42 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
50. RPS3 ENSGALG00000017330 287.78 2316.48 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
51. FKBP4 ENSGALG00000014331 283.81 2284.52 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
52. RPS12 ENSGALG00000013990 283.81 2284.52 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
53. TXN ENSGALG00000015704 279.84 2252.57 thioredoxin [Source:NCBI gene;Acc:396437]
54. RPS29 ENSGALG00000012229 275.87 2220.61 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
55. RPLP1 ENSGALG00000030878 273.89 2204.67 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
56. ATP5G3 269.92 2172.71 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
57. EIF5A2 ENSGALG00000009309 265.95 2140.76 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
58. RPL38 ENSGALG00000001465 265.95 2140.76 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
59. HMGN5 ENSGALG00000007131 261.98 2108.80 high mobility group nucleosome binding domain 5, transcript variant X1
60. EEF1B2 ENSGALG00000008590 259.99 2092.78 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
61. H3-IX H3-IX 259.99 2092.78
62. RPL27 ENSGALG00000002837 259.99 2092.78 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
63. KPNA2 ENSGALG00000003584 258.01 2076.85 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
64. RPS15A ENSGALG00000006771 258.01 2076.85 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
65. CRABP-I ENSGALG00000003193 254.04 2044.89 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
66. SNRPE ENSGALG00000000137 254.04 2044.89 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
67. RPSA 250.07 2012.93 ribosomal protein SA
68. RPL35A ENSGALG00000007611, ENSGALG00000041230 246.10 1980.98 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
69. MT-ND2 MT-ND2 244.12 1965.04
70. ANP32B ENSGALG00000037483 236.18 1901.13 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
71. RPL37 ENSGALG00000014833 234.19 1885.11 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
72. RPL21 ENSGALG00000027035 232.21 1869.17 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
73. RPS14 ENSGALG00000004588 230.22 1853.15 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
74. RPL32 ENSGALG00000027142 228.24 1837.21 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
75. RPL36 ENSGALG00000000474 226.25 1821.19 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
76. RPS8 ENSGALG00000010124 226.25 1821.19 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
77. ENSGALG00000018384 ENSGALG00000018384 220.30 1773.30
78. HNRNPDL ENSGALG00000023199 218.31 1757.28 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
79. HSPE1 ENSGALG00000009070 218.31 1757.28 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
80. RPL23A ENSGALG00000003966 216.33 1741.34 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
81. NONO ENSGALG00000005507 214.35 1725.41 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
82. HMGN2 HMGN2 212.36 1709.39
83. PGK1 ENSGALG00000007936 212.36 1709.39 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
84. HSPA8 ENSGALG00000006512 208.39 1677.43 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
85. BTF3L4 ENSGALG00000010570 206.41 1661.49 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
86. RPL3 ENSGALG00000012172 204.42 1645.47 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
87. RPS15 ENSGALG00000015195 202.44 1629.54 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
88. RPL4 ENSGALG00000007711 200.45 1613.52 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
89. HMGB1 ENSGALG00000042875 194.50 1565.62 high mobility group box 1 [Source:NCBI gene;Acc:395724]
90. ENSGALG00000028992 ENSGALG00000028992 192.51 1549.60
91. HMGB2 ENSGALG00000010745 190.53 1533.67 high mobility group box 2 [Source:NCBI gene;Acc:396482]
92. RPLP2 ENSGALG00000034811 190.53 1533.67 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
93. CCT6 CCT6 186.56 1501.71
94. RPL6 ENSGALG00000004818 186.56 1501.71 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
95. IGF2BP3 ENSGALG00000010961 182.59 1469.75 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
96. NDUFB9 ENSGALG00000042242 180.61 1453.82 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
97. RPL13 ENSGALG00000006179 178.62 1437.80 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
98. RPL29 ENSGALG00000026978 178.62 1437.80 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
99. TCF12 ENSGALG00000004304 178.62 1437.80 transcription factor 12 [Source:NCBI gene;Acc:396334]
100. RPL10A ENSGALG00000002644 176.64 1421.86 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA