Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s24.

Sample reads: 124,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4970.53 40008.85
2. MT-ATP6 MT-ATP6 4869.49 39195.56
3. MT-ND5 MT-ND5 2817.25 22676.64
4. MT-CYB MT-CYB 2275.32 18314.53
5. MT-ND4 MT-ND4 2266.13 18240.56
6. GAPDH ENSGALG00000014442 2149.35 17300.57 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. EEF1A EEF1A 2112.61 17004.84
8. MT-ND1 MT-ND1 1581.17 12727.17
9. gga-mir-3527 gga-mir-3527 1549.68 12473.70
10. PPIA ENSGALG00000028600 1157.34 9315.67 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
11. RPS23 ENSGALG00000015617 1048.43 8439.03 ribosomal protein S23
12. NME2 ENSGALG00000002932 999.88 8048.25 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
13. gga-mir-3533 ENSGALG00000027736 943.46 7594.11 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
14. MT-CO1 MT-CO1 938.21 7551.85
15. ENO1 ENSGALG00000002377 880.47 7087.09 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
16. MT-ND3 MT-ND3 855.54 6886.42
17. RPL5 ENSGALG00000005922 604.91 4869.05 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. EIF4G2 ENSGALG00000005587 565.55 4552.23 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
19. STMN1 ENSGALG00000001475 564.24 4541.69 stathmin 1 [Source:NCBI gene;Acc:396057]
20. RPS7 ENSGALG00000016392 553.74 4457.17 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
21. RPS6 ENSGALG00000015082 543.24 4372.65 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
22. TMSB4X ENSGALG00000026383 524.87 4224.79 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
23. RPL26 RPL26 509.12 4098.01
24. RPL8 ENSGALG00000016232 501.25 4034.67 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
25. RPL18A 496.00 3992.41 ribosomal protein L18a
26. RPL15 ENSGALG00000011290 488.13 3929.06 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
27. ENSGALG00000002696 ENSGALG00000002696 468.45 3770.65
28. RPS16 ENSGALG00000026490 467.14 3760.11 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
29. RPL23 ENSGALG00000001634 439.58 3538.27 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
30. RPL27A ENSGALG00000005948 439.58 3538.27 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
31. RPS27A ENSGALG00000036790 427.77 3443.21 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
32. RPS10 ENSGALG00000002813 422.52 3400.95 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
33. RPL7A ENSGALG00000003197 418.58 3369.24 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
34. LDHB ENSGALG00000035836 404.15 3253.09 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
35. RPS29 ENSGALG00000012229 402.84 3242.54 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
36. RAN ENSGALG00000002569 394.97 3179.20 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
37. RPS4 RPS4 388.40 3126.31
38. RPL31 ENSGALG00000016775 385.78 3105.22 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
39. RPL37 ENSGALG00000014833 380.53 3062.97 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
40. CIRBP ENSGALG00000030918 367.41 2957.36 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
41. RPL7 ENSGALG00000035252 354.29 2851.76 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
42. RPS15 ENSGALG00000015195 352.98 2841.21 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
43. SNRPG ENSGALG00000028409 347.73 2798.95 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
44. RPL38 ENSGALG00000001465 341.17 2746.15 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
45. RPL14 ENSGALG00000043379 330.67 2661.63 ribosomal protein L14
46. FKBP4 ENSGALG00000014331 326.73 2629.92 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
47. RPL36 ENSGALG00000000474 314.92 2534.86 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
48. RPS24 ENSGALG00000004871 310.99 2503.22 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
49. RPS11 ENSGALG00000017299 309.67 2492.60 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
50. RPL27 ENSGALG00000002837 308.36 2482.05 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
51. CRABP-I ENSGALG00000003193 307.05 2471.51 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
52. ATP5G3 300.49 2418.71 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
53. SLC25A6_1 ENSGALG00000016691 297.86 2397.54 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
54. H2AFZ ENSGALG00000014023 296.55 2386.99 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
55. MIF ENSGALG00000006326 296.55 2386.99 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
56. RPS14 ENSGALG00000004588 286.05 2302.48 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
57. ATP6V0C ENSGALG00000009229 284.74 2291.93 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
58. RPLP1 ENSGALG00000030878 280.81 2260.30 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
59. KPNA2 ENSGALG00000003584 266.37 2144.07 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
60. RPL13 ENSGALG00000006179 262.44 2112.44 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
61. RPS8 ENSGALG00000010124 257.19 2070.18 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
62. RPS20 ENSGALG00000014432 250.63 2017.37 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
63. H3-IX H3-IX 249.31 2006.75
64. RPL35A ENSGALG00000007611, ENSGALG00000041230 248.00 1996.20 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
65. SNRPE ENSGALG00000000137 246.69 1985.66 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
66. MT-ND2 MT-ND2 244.07 1964.57
67. ENSGALG00000018384 ENSGALG00000018384 241.44 1943.40
68. EEF1D 240.13 1932.86 eukaryotic translation elongation factor 1 delta, transcript variant X13
69. RPL37A ENSGALG00000011472 240.13 1932.86 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
70. HNRNPDL ENSGALG00000023199 238.82 1922.31 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
71. RPS12 ENSGALG00000013990 234.88 1890.60 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
72. RPL23A ENSGALG00000003966 228.32 1837.80 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
73. EIF1 ENSGALG00000028517 227.01 1827.25 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
74. EEF1B2 ENSGALG00000008590 225.69 1816.63 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
75. MDK ENSGALG00000008367 225.69 1816.63 midkine [Source:NCBI gene;Acc:423196]
76. RPL6 ENSGALG00000004818 225.69 1816.63 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
77. CRHOA CRHOA 223.07 1795.54
78. PGK1 ENSGALG00000007936 223.07 1795.54 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
79. HMGN5 ENSGALG00000007131 216.51 1742.73 high mobility group nucleosome binding domain 5, transcript variant X1
80. ENSGALG00000028992 ENSGALG00000028992 213.88 1721.57
81. RPL29 ENSGALG00000026978 212.57 1711.02 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
82. RPL32 ENSGALG00000027142 211.26 1700.48 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
83. RPSA 211.26 1700.48 ribosomal protein SA
84. TXN ENSGALG00000015704 208.64 1679.39 thioredoxin [Source:NCBI gene;Acc:396437]
85. RPS15A ENSGALG00000006771 207.32 1668.76 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
86. RPL21 ENSGALG00000027035 206.01 1658.22 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
87. RPS21 ENSGALG00000005338 200.76 1615.96 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
88. BTF3L4 ENSGALG00000010570 199.45 1605.42 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
89. HSPE1 ENSGALG00000009070 198.14 1594.87 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
90. PRDX1 ENSGALG00000010243 190.27 1531.52 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
91. RPL10A ENSGALG00000002644 190.27 1531.52 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
92. HNRNPA3 ENSGALG00000009250 187.64 1510.35 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
93. SUB1 ENSGALG00000003248 175.83 1415.29 SUB1 homolog, transcriptional regulator [Source:NCBI gene;Acc:427425]
94. NDUFB9 ENSGALG00000042242 171.90 1383.66 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
95. DDX3X ENSGALG00000016231 169.27 1362.49 DEAD-box helicase 3 X-linked [Source:NCBI gene;Acc:418567]
96. CCT6 CCT6 167.96 1351.95
97. HMGN2 HMGN2 166.65 1341.40
98. HMGB2 ENSGALG00000010745 162.71 1309.69 high mobility group box 2 [Source:NCBI gene;Acc:396482]
99. HSPA8 ENSGALG00000006512 162.71 1309.69 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
100. COX7C ENSGALG00000027963 160.09 1288.60 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA