Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_1, section s9.

Sample reads: 124,244. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5601.16 45083.77
2. MT-ATP6 MT-ATP6 2410.17 19399.47
3. RPLP1 ENSGALG00000030878 1446.10 11639.67 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
4. TMSB4X ENSGALG00000026383 1335.51 10749.53 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
5. MT-CYB MT-CYB 1267.07 10198.65
6. EEF1A EEF1A 1093.75 8803.60
7. RPS10 ENSGALG00000002813 1044.90 8410.41 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
8. RPS3A ENSGALG00000010077 879.02 7075.24 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
9. MT-CO1 MT-CO1 873.07 7027.35
10. MT-ND4 MT-ND4 857.94 6905.56
11. RPS8 ENSGALG00000010124 800.41 6442.50 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
12. RPS29 ENSGALG00000012229 776.36 6248.93 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
13. MT-ND5 MT-ND5 756.77 6091.25
14. RPS12 ENSGALG00000013990 733.96 5907.65 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
15. gga-mir-3527 gga-mir-3527 729.25 5869.74
16. MT-ND6 MT-ND6 714.62 5751.98
17. RPLP0 ENSGALG00000023294 658.58 5300.91 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
18. RPL35A ENSGALG00000007611, ENSGALG00000041230 644.70 5189.19 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
19. RPL38 ENSGALG00000001465 627.59 5051.48 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
20. GAPDH ENSGALG00000014442 615.93 4957.62 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
21. ENSGALG00000018384 ENSGALG00000018384 605.77 4875.85
22. RPL8 ENSGALG00000016232 594.61 4786.02 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
23. RPLP2 ENSGALG00000034811 588.16 4734.10 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
24. RPL14 ENSGALG00000043379 586.42 4720.10 ribosomal protein L14
25. RPL26 RPL26 565.84 4554.45
26. gga-mir-3533 ENSGALG00000027736 551.46 4438.70 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
27. RPL27 ENSGALG00000002837 544.27 4380.83 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
28. RPS21 ENSGALG00000005338 540.80 4352.90 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
29. RPS23 ENSGALG00000015617 533.61 4295.03 ribosomal protein S23
30. RPL23 ENSGALG00000001634 514.02 4137.35 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
31. RPL4 ENSGALG00000007711 513.77 4135.34 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
32. RPL36AL ENSGALG00000004952 508.57 4093.48 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
33. RPS15A ENSGALG00000006771 503.11 4049.54 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
34. RPL18A 502.61 4045.51 ribosomal protein L18a
35. RPL23A ENSGALG00000003966 499.89 4023.62 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
36. RPL32 ENSGALG00000027142 472.12 3800.10 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
37. RPL13 ENSGALG00000006179 464.92 3742.14 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
38. RPL27A ENSGALG00000005948 463.93 3734.18 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
39. RPL15 ENSGALG00000011290 454.76 3660.37 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
40. RPL6 ENSGALG00000004818 453.77 3652.40 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
41. RPL7A ENSGALG00000003197 447.82 3604.51 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
42. RPL21 ENSGALG00000027035 437.40 3520.64 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
43. RPL19 ENSGALG00000001658 436.41 3512.67 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
44. RAN ENSGALG00000002569 430.95 3468.72 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
45. RPL35 ENSGALG00000035677 420.04 3380.90 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
46. MT-ND1 MT-ND1 417.07 3357.00
47. RPL29 ENSGALG00000026978 410.37 3303.07 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
48. RPS4 RPS4 396.49 3191.35
49. ATP5G3 390.54 3143.46 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
50. RPS14 ENSGALG00000004588 388.80 3129.45 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
51. CIRBP ENSGALG00000030918 387.56 3119.47 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
52. HMGB2 ENSGALG00000010745 378.14 3043.65 high mobility group box 2 [Source:NCBI gene;Acc:396482]
53. SNRPD1 ENSGALG00000041334 359.54 2893.94 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
54. HSPA8 ENSGALG00000006512 350.12 2818.12 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
55. RPS7 ENSGALG00000016392 341.19 2746.24 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
56. RPS13 ENSGALG00000006096 338.46 2724.27 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
57. RPS15 ENSGALG00000015195 331.03 2664.46 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
58. RPS2 ENSGALG00000005490 330.78 2662.45 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
59. RPS16 ENSGALG00000026490 324.08 2608.52 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
60. MIF ENSGALG00000006326 323.34 2602.57 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
61. MT-ND3 MT-ND3 321.85 2590.57
62. RPL12 ENSGALG00000008806 320.86 2582.60 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
63. NME2 ENSGALG00000002932 320.61 2580.59 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
64. RPS11 ENSGALG00000017299 315.90 2542.68 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
65. RPS6 ENSGALG00000015082 314.16 2528.68 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
66. PPIA ENSGALG00000028600 313.67 2524.73 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
67. RPS25 ENSGALG00000007699 310.20 2496.80 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
68. RPL24 ENSGALG00000015339 308.21 2480.78 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
69. ENSGALG00000028649 ENSGALG00000028649 305.73 2460.82
70. HMGN5 ENSGALG00000007131 303.01 2438.93 high mobility group nucleosome binding domain 5, transcript variant X1
71. MARCKSL1 ENSGALG00000032335 301.77 2428.95 MARCKS like 1 [Source:NCBI gene;Acc:770764]
72. ANP32B ENSGALG00000037483 298.30 2401.02 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
73. TCEB3 ENSGALG00000034625 294.33 2369.06 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
74. RPS20 ENSGALG00000014432 289.62 2331.15 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
75. RPL31 ENSGALG00000016775 288.87 2325.12 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
76. STMN1 ENSGALG00000001475 288.63 2323.18 stathmin 1 [Source:NCBI gene;Acc:396057]
77. TXN ENSGALG00000015704 288.38 2321.17 thioredoxin [Source:NCBI gene;Acc:396437]
78. RPL37 ENSGALG00000014833 286.64 2307.17 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
79. RPS24 ENSGALG00000004871 284.16 2287.21 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
80. ENO1 ENSGALG00000002377 280.44 2257.26 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
81. RPS27A ENSGALG00000036790 274.24 2207.36 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
82. RPSA 271.02 2181.44 ribosomal protein SA
83. ENSGALG00000002696 ENSGALG00000002696 262.34 2111.58
84. RPL10A ENSGALG00000002644 253.66 2041.71 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
85. HMGN2 HMGN2 249.20 2005.81
86. RPL5 ENSGALG00000005922 243.74 1961.86 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
87. RPL7 ENSGALG00000035252 240.52 1935.95 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
88. SHFM1 SHFM1 239.28 1925.97
89. ENSGALG00000028992 ENSGALG00000028992 229.11 1844.11
90. EIF3J ENSGALG00000008187 228.37 1838.15 eukaryotic translation initiation factor 3 subunit J [Source:NCBI gene;Acc:415573]
91. H2AFZ ENSGALG00000014023 227.63 1832.20 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
92. LDHB ENSGALG00000035836 226.14 1820.20 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
93. RPS3 ENSGALG00000017330 223.91 1802.25 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
94. PHB2 ENSGALG00000014567 215.97 1738.34 prohibitin 2 [Source:NCBI gene;Acc:771124]
95. SNRPG ENSGALG00000028409 213.25 1716.45 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
96. ACTG1_1 ENSGALG00000001381 211.01 1698.42 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
97. ENSGALG00000018386 ENSGALG00000018386 209.28 1684.50
98. RPL36 ENSGALG00000000474 206.30 1660.51 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
99. EIF5A2 ENSGALG00000009309 205.56 1654.55 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
100. SET ENSGALG00000004701 202.83 1632.58 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA