Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_1, section s8.

Sample reads: 124,234. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 9286.05 74749.29
2. MT-ATP6 MT-ATP6 3156.14 25405.77
3. MT-CYB MT-CYB 1622.18 13057.95
4. TMSB4X ENSGALG00000026383 1293.84 10414.94 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
5. MT-ND5 MT-ND5 1234.71 9938.96
6. RPLP1 ENSGALG00000030878 1195.15 9620.52 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
7. EEF1A EEF1A 1099.65 8851.78
8. RPS10 ENSGALG00000002813 999.60 8046.41 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
9. MT-CO1 MT-CO1 997.78 8031.76
10. MT-ND6 MT-ND6 984.59 7925.59
11. MT-ND4 MT-ND4 974.13 7841.39
12. RPS3A ENSGALG00000010077 857.25 6900.55 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
13. RPS29 ENSGALG00000012229 836.79 6735.85 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
14. RPL35A ENSGALG00000007611, ENSGALG00000041230 795.40 6402.68 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
15. RPS12 ENSGALG00000013990 769.48 6194.03 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
16. gga-mir-3527 gga-mir-3527 768.57 6186.71
17. RPS8 ENSGALG00000010124 724.00 5827.93 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
18. RPL15 ENSGALG00000011290 678.98 5465.54 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
19. GAPDH ENSGALG00000014442 650.33 5234.92 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
20. RPL38 ENSGALG00000001465 608.94 4901.74 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
21. gga-mir-3533 ENSGALG00000027736 596.66 4802.89 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
22. RPLP0 ENSGALG00000023294 579.38 4663.80 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
23. RPL27 ENSGALG00000002837 571.65 4601.57 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
24. RPS21 ENSGALG00000005338 565.29 4550.38 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
25. RPL14 ENSGALG00000043379 555.28 4469.80 ribosomal protein L14
26. RPL23 ENSGALG00000001634 550.28 4429.55 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
27. RPLP2 ENSGALG00000034811 537.54 4327.00 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
28. RPL8 ENSGALG00000016232 533.00 4290.45 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
29. RPL19 ENSGALG00000001658 521.63 4198.93 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
30. RPL18A 500.71 4030.53 ribosomal protein L18a
31. RPL36AL ENSGALG00000004952 494.34 3979.26 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
32. RPL23A ENSGALG00000003966 493.43 3971.93 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
33. RPL26 RPL26 481.61 3876.78
34. RPL7A ENSGALG00000003197 477.06 3840.16 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
35. RPL35 ENSGALG00000035677 475.24 3825.51 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
36. MT-ND1 MT-ND1 473.88 3814.56
37. RPS23 ENSGALG00000015617 469.78 3781.56 ribosomal protein S23
38. RPL29 ENSGALG00000026978 464.78 3741.31 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
39. ATP5G3 463.42 3730.36 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
40. RPS15A ENSGALG00000006771 463.42 3730.36 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
41. ENSGALG00000018384 ENSGALG00000018384 460.69 3708.39
42. RPL4 ENSGALG00000007711 453.87 3653.49 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
43. RPL27A ENSGALG00000005948 441.59 3554.64 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
44. RPL6 ENSGALG00000004818 439.77 3539.99 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
45. RPL32 ENSGALG00000027142 412.48 3320.31 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
46. RPS14 ENSGALG00000004588 405.66 3265.41 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
47. RPL13 ENSGALG00000006179 392.93 3162.94 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
48. RPS13 ENSGALG00000006096 388.38 3126.32 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
49. PPIA ENSGALG00000028600 385.19 3100.64 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
50. RPL21 ENSGALG00000027035 381.56 3071.42 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
51. MIF ENSGALG00000006326 371.55 2990.84 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
52. RPS4 RPS4 365.64 2943.27
53. RPS7 ENSGALG00000016392 364.73 2935.94 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
54. RAN ENSGALG00000002569 357.00 2873.72 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
55. HMGB2 ENSGALG00000010745 350.18 2818.82 high mobility group box 2 [Source:NCBI gene;Acc:396482]
56. CIRBP ENSGALG00000030918 345.17 2778.49 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
57. RPS16 ENSGALG00000026490 344.72 2774.87 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
58. MT-ND3 MT-ND3 342.90 2760.22
59. NME2 ENSGALG00000002932 331.53 2668.69 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
60. RPS25 ENSGALG00000007699 331.53 2668.69 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
61. ENO1 ENSGALG00000002377 328.35 2643.10 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
62. ENSGALG00000028649 ENSGALG00000028649 326.53 2628.45
63. RPL24 ENSGALG00000015339 324.25 2610.09 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
64. RPSA 323.80 2606.47 ribosomal protein SA
65. RPL37 ENSGALG00000014833 321.07 2584.50 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
66. RPS15 ENSGALG00000015195 319.71 2573.55 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
67. RPS20 ENSGALG00000014432 317.43 2555.19 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
68. RPS11 ENSGALG00000017299 312.89 2518.65 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
69. RPL31 ENSGALG00000016775 307.43 2474.70 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
70. ACTG1_1 ENSGALG00000001381 301.52 2427.13 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
71. RPL12 ENSGALG00000008806 296.51 2386.80 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
72. RPS24 ENSGALG00000004871 296.51 2386.80 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
73. RPS27A ENSGALG00000036790 294.24 2368.52 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
74. HSPA8 ENSGALG00000006512 275.14 2214.78 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
75. MARCKSL1 ENSGALG00000032335 269.68 2170.82 MARCKS like 1 [Source:NCBI gene;Acc:770764]
76. RPS2 ENSGALG00000005490 268.32 2159.88 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
77. HMGN2 HMGN2 266.50 2145.23
78. TCEB3 ENSGALG00000034625 264.22 2126.87 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
79. TXN ENSGALG00000015704 263.77 2123.25 thioredoxin [Source:NCBI gene;Acc:396437]
80. RPS6 ENSGALG00000015082 263.31 2119.55 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
81. SNRPD1 ENSGALG00000041334 261.95 2108.60 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
82. LDHB ENSGALG00000035836 259.68 2090.33 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
83. PKM ENSGALG00000001992 246.94 1987.78 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
84. HMGN5 ENSGALG00000007131 240.12 1932.88 high mobility group nucleosome binding domain 5, transcript variant X1
85. ANP32B ENSGALG00000037483 237.39 1910.90 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
86. RPS28 ENSGALG00000024398 236.94 1907.28 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
87. ENSGALG00000002696 ENSGALG00000002696 234.21 1885.30
88. SHFM1 SHFM1 232.84 1874.28
89. ITGB1BP3 ENSGALG00000030120 231.48 1863.33 integrin beta 1 binding protein 3 [Source:NCBI gene;Acc:415448]
90. RPL5 ENSGALG00000005922 230.57 1856.00 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
91. ENSGALG00000028992 ENSGALG00000028992 229.66 1848.68
92. STMN1 ENSGALG00000001475 227.84 1834.03 stathmin 1 [Source:NCBI gene;Acc:396057]
93. RPL10A ENSGALG00000002644 223.75 1801.11 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
94. RPL36 ENSGALG00000000474 218.75 1760.86 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
95. RPL22 ENSGALG00000000719 214.20 1724.23 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
96. EEF1B2 ENSGALG00000008590 213.29 1716.91 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
97. EEF1D 210.56 1694.93 eukaryotic translation elongation factor 1 delta, transcript variant X13
98. RPS3 ENSGALG00000017330 210.56 1694.93 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
99. SNRPG ENSGALG00000028409 209.20 1683.98 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
100. RPL7 ENSGALG00000035252 206.92 1665.63 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA