Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_1, section s4.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 7500.87 60377.28
2. MT-ATP6 MT-ATP6 3585.71 28862.71
3. MT-CYB MT-CYB 1668.41 13429.65
4. MT-ND5 MT-ND5 1281.35 10314.06
5. TMSB4X ENSGALG00000026383 1233.19 9926.40 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
6. RPLP1 ENSGALG00000030878 1208.89 9730.80 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
7. EEF1A EEF1A 1171.08 9426.46
8. MT-ND6 MT-ND6 1100.87 8861.31
9. MT-CO1 MT-CO1 1038.31 8357.74
10. RPS10 ENSGALG00000002813 974.85 7846.93 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
11. MT-ND4 MT-ND4 946.95 7622.35
12. ENSGALG00000018384 ENSGALG00000018384 892.94 7187.60
13. RPS29 ENSGALG00000012229 888.44 7151.38 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
14. RPS12 ENSGALG00000013990 803.82 6470.24 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
15. RPS3A ENSGALG00000010077 794.82 6397.80 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
16. RPLP0 ENSGALG00000023294 761.52 6129.76 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
17. RPL35A ENSGALG00000007611, ENSGALG00000041230 749.37 6031.96 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
18. RPL15 ENSGALG00000011290 712.91 5738.48 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
19. GAPDH ENSGALG00000014442 702.11 5651.54 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
20. RPL38 ENSGALG00000001465 668.35 5379.80 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
21. gga-mir-3527 gga-mir-3527 649.90 5231.29
22. RPS8 ENSGALG00000010124 574.29 4622.67 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
23. RPL6 ENSGALG00000004818 570.24 4590.07 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
24. RPL23 ENSGALG00000001634 556.74 4481.41 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
25. gga-mir-3533 ENSGALG00000027736 547.29 4405.34 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
26. RPS21 ENSGALG00000005338 536.93 4321.95 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
27. RPLP2 ENSGALG00000034811 516.68 4158.95 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
28. RPL19 ENSGALG00000001658 510.38 4108.24 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
29. RPL27 ENSGALG00000002837 504.08 4057.53 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
30. RPL26 RPL26 501.83 4039.42
31. RPL23A ENSGALG00000003966 488.78 3934.37 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
32. MT-ND1 MT-ND1 487.88 3927.13
33. RPL29 ENSGALG00000026978 479.77 3861.85 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
34. RPL8 ENSGALG00000016232 475.72 3829.25 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
35. RPS23 ENSGALG00000015617 460.42 3706.09 ribosomal protein S23
36. RPL4 ENSGALG00000007711 453.67 3651.76 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
37. RPL35 ENSGALG00000035677 451.42 3633.65 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
38. RPL7A ENSGALG00000003197 448.72 3611.91 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
39. RPL14 ENSGALG00000043379 444.67 3579.31 ribosomal protein L14
40. RPL18A 434.77 3499.62 ribosomal protein L18a
41. RPL32 ENSGALG00000027142 427.12 3438.05 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
42. ATP5G3 424.42 3416.31 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
43. RPL27A ENSGALG00000005948 419.92 3380.09 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
44. PPIA ENSGALG00000028600 415.41 3343.79 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
45. MARCKSL1 ENSGALG00000032335 410.46 3303.94 MARCKS like 1 [Source:NCBI gene;Acc:770764]
46. RPL36AL ENSGALG00000004952 406.41 3271.34 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
47. RPS7 ENSGALG00000016392 404.61 3256.86 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
48. ACTG1_1 ENSGALG00000001381 402.36 3238.74 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
49. TCEB3 ENSGALG00000034625 386.16 3108.34 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
50. NME2 ENSGALG00000002932 382.56 3079.37 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
51. RPS14 ENSGALG00000004588 380.76 3064.88 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
52. RPS11 ENSGALG00000017299 380.31 3061.26 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
53. RPS15A ENSGALG00000006771 372.21 2996.06 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
54. RPS4 RPS4 369.51 2974.32
55. RPL37 ENSGALG00000014833 367.71 2959.83 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
56. MT-ND3 MT-ND3 365.91 2945.35
57. ENO1 ENSGALG00000002377 364.11 2930.86 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
58. RPS13 ENSGALG00000006096 361.41 2909.12 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
59. RPS25 ENSGALG00000007699 360.51 2901.88 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
60. ENSGALG00000018386 ENSGALG00000018386 360.06 2898.26
61. RAN ENSGALG00000002569 357.36 2876.52 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
62. RPS16 ENSGALG00000026490 353.76 2847.55 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
63. MIF ENSGALG00000006326 350.60 2822.11 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
64. RPL13 ENSGALG00000006179 346.10 2785.89 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
65. RPSA 345.20 2778.64 ribosomal protein SA
66. ENSGALG00000028649 ENSGALG00000028649 320.00 2575.80
67. RPS15 ENSGALG00000015195 315.95 2543.20 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
68. CIRBP ENSGALG00000030918 311.00 2503.35 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
69. RPL12 ENSGALG00000008806 306.05 2463.51 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
70. RPS20 ENSGALG00000014432 305.15 2456.27 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
71. RPL21 ENSGALG00000027035 302.90 2438.15 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
72. RPL24 ENSGALG00000015339 302.90 2438.15 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
73. PKM ENSGALG00000001992 301.10 2423.67 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
74. ANP32B ENSGALG00000037483 292.55 2354.84 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
75. HSPA8 ENSGALG00000006512 290.75 2340.35 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
76. HMGN2 HMGN2 287.14 2311.30
77. LDHB ENSGALG00000035836 286.69 2307.67 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
78. RPS6 ENSGALG00000015082 286.24 2304.05 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
79. STMN1 ENSGALG00000001475 275.89 2220.74 stathmin 1 [Source:NCBI gene;Acc:396057]
80. GNB2L1 ENSGALG00000000122 273.19 2199.01 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
81. RPL31 ENSGALG00000016775 272.29 2191.76 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
82. SNRPD1 ENSGALG00000041334 271.84 2188.14 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
83. HMGB2 ENSGALG00000010745 268.69 2162.79 high mobility group box 2 [Source:NCBI gene;Acc:396482]
84. RPS2 ENSGALG00000005490 260.14 2093.96 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
85. RPS27A ENSGALG00000036790 256.54 2064.99 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
86. RPL5 ENSGALG00000005922 246.64 1985.30 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
87. HMGN5 ENSGALG00000007131 243.94 1963.56 high mobility group nucleosome binding domain 5, transcript variant X1
88. RPS24 ENSGALG00000004871 240.34 1934.59 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
89. SNRPG ENSGALG00000028409 235.84 1898.36 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
90. RPS3 ENSGALG00000017330 226.39 1822.30 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
91. TXN ENSGALG00000015704 219.63 1767.88 thioredoxin [Source:NCBI gene;Acc:396437]
92. RPL36 ENSGALG00000000474 217.83 1753.39 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
93. RPL7 ENSGALG00000035252 216.48 1742.53 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
94. RPS28 ENSGALG00000024398 216.48 1742.53 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
95. ENSGALG00000002696 ENSGALG00000002696 216.03 1738.91
96. ALDOC ENSGALG00000026077 210.63 1695.44 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
97. ENSGALG00000028992 ENSGALG00000028992 209.28 1684.57
98. SET ENSGALG00000004701 207.03 1666.46 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
99. EEF1D 198.48 1597.64 eukaryotic translation elongation factor 1 delta, transcript variant X13
100. RPL9 ENSGALG00000000150 198.48 1597.64 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA