Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_1, section s35.

Sample reads: 124,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 9371.30 75434.51
2. MT-ATP6 MT-ATP6 3491.25 28102.90
3. MT-CYB MT-CYB 2106.90 16959.54
4. EEF1A EEF1A 1655.85 13328.81
5. RPLP1 ENSGALG00000030878 1550.90 12484.01 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
6. MT-ND6 MT-ND6 1477.17 11890.52
7. RPS10 ENSGALG00000002813 1377.42 11087.58 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
8. MT-ND5 MT-ND5 1223.02 9844.73
9. MT-ND4 MT-ND4 1158.84 9328.11
10. RPS3A ENSGALG00000010077 1148.43 9244.32 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
11. gga-mir-3527 gga-mir-3527 1102.46 8874.28
12. MT-CO1 MT-CO1 964.54 7764.09
13. RPL15 ENSGALG00000011290 869.13 6996.08 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
14. RPS8 ENSGALG00000010124 850.91 6849.42 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
15. RPS29 ENSGALG00000012229 835.30 6723.77 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
16. RPL8 ENSGALG00000016232 721.67 5809.10 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
17. RPS12 ENSGALG00000013990 707.79 5697.37 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
18. RPLP0 ENSGALG00000023294 681.77 5487.92 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
19. GAPDH ENSGALG00000014442 680.90 5480.92 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
20. RPL38 ENSGALG00000001465 648.81 5222.61 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
21. RPS15A ENSGALG00000006771 632.33 5089.96 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
22. MT-ND3 MT-ND3 627.99 5055.02
23. RPL27 ENSGALG00000002837 626.26 5041.10 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
24. RPL6 ENSGALG00000004818 615.85 4957.30 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
25. RPL29 ENSGALG00000026978 608.91 4901.44 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
26. RPS21 ENSGALG00000005338 589.83 4747.85 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
27. RPL14 ENSGALG00000043379 588.96 4740.85 ribosomal protein L14
28. RPS23 ENSGALG00000015617 580.29 4671.06 ribosomal protein S23
29. RPL26 RPL26 573.35 4615.19
30. RPL36AL ENSGALG00000004952 572.48 4608.19 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
31. RPL23 ENSGALG00000001634 562.07 4524.40 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
32. RPL35A ENSGALG00000007611, ENSGALG00000041230 561.20 4517.39 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
33. MT-ND1 MT-ND1 557.73 4489.46
34. RPL7A ENSGALG00000003197 524.77 4224.15 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
35. RPL4 ENSGALG00000007711 517.83 4168.29 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
36. RPLP2 ENSGALG00000034811 515.23 4147.36 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
37. RPL13 ENSGALG00000006179 512.63 4126.43 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
38. RPL35 ENSGALG00000035677 508.29 4091.49 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
39. RPL27A ENSGALG00000005948 487.47 3923.90 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
40. RPL18A 475.33 3826.18 ribosomal protein L18a
41. RPL23A ENSGALG00000003966 466.66 3756.39 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
42. gga-mir-3533 ENSGALG00000027736 465.79 3749.39 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
43. RPS11 ENSGALG00000017299 463.19 3728.46 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
44. RPS14 ENSGALG00000004588 428.49 3449.14 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
45. RPL32 ENSGALG00000027142 423.29 3407.28 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
46. RPL19 ENSGALG00000001658 420.69 3386.35 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
47. RPS4 RPS4 398.13 3204.76
48. RPL31 ENSGALG00000016775 392.93 3162.90 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
49. RPSA 392.06 3155.90 ribosomal protein SA
50. RPS25 ENSGALG00000007699 391.19 3148.89 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
51. RPS7 ENSGALG00000016392 379.92 3058.18 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
52. TMSB4X ENSGALG00000026383 377.32 3037.25 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
53. RPL37 ENSGALG00000014833 376.45 3030.24 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
54. RPS2 ENSGALG00000005490 366.91 2953.45 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
55. MDK ENSGALG00000008367 363.44 2925.52 midkine [Source:NCBI gene;Acc:423196]
56. RPL21 ENSGALG00000027035 359.10 2890.58 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
57. RPS13 ENSGALG00000006096 355.63 2862.65 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
58. PPIA ENSGALG00000028600 346.96 2792.86 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
59. ATP5G3 346.09 2785.86 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
60. RPS15 ENSGALG00000015195 343.49 2764.93 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
61. TCEB3 ENSGALG00000034625 330.48 2660.21 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
62. RPS16 ENSGALG00000026490 329.61 2653.20 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
63. RPS20 ENSGALG00000014432 324.40 2611.27 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
64. RPS6 ENSGALG00000015082 323.54 2604.34 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
65. RPL24 ENSGALG00000015339 320.94 2583.41 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
66. RPL5 ENSGALG00000005922 317.47 2555.48 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
67. EEF1D 313.13 2520.55 eukaryotic translation elongation factor 1 delta, transcript variant X13
68. ENSGALG00000028649 ENSGALG00000028649 309.66 2492.62
69. RPL12 ENSGALG00000008806 309.66 2492.62 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
70. RPS24 ENSGALG00000004871 290.58 2339.03 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
71. RPL7 ENSGALG00000035252 287.11 2311.10 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
72. RPL10A ENSGALG00000002644 284.50 2290.09 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
73. EEF1B2 ENSGALG00000008590 279.30 2248.23 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
74. RPS27A ENSGALG00000036790 277.57 2234.31 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
75. SNRPD1 ENSGALG00000041334 276.70 2227.30 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
76. GNB2L1 ENSGALG00000000122 271.49 2185.37 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
77. STMN1 ENSGALG00000001475 261.95 2108.57 stathmin 1 [Source:NCBI gene;Acc:396057]
78. ACTG1_1 ENSGALG00000001381 256.75 2066.72 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
79. ANP32B ENSGALG00000037483 255.88 2059.71 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
80. RPS3 ENSGALG00000017330 253.28 2038.78 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
81. RPL9 ENSGALG00000000150 248.94 2003.85 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
82. NME2 ENSGALG00000002932 246.34 1982.92 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
83. HMGN2 HMGN2 239.40 1927.06
84. ENSGALG00000028992 ENSGALG00000028992 230.73 1857.27
85. ENSGALG00000002696 ENSGALG00000002696 222.92 1794.40
86. ENSGALG00000018384 ENSGALG00000018384 222.05 1787.40
87. H3-IX H3-IX 217.72 1752.54
88. RAN ENSGALG00000002569 215.98 1738.54 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
89. CIRBP ENSGALG00000030918 212.51 1710.60 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
90. RPL36 ENSGALG00000000474 211.64 1703.60 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
91. RPS17 ENSGALG00000002157 211.64 1703.60 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
92. RPS28 ENSGALG00000024398 206.44 1661.74 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
93. TPT1 ENSGALG00000028872 206.44 1661.74 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
94. SNRPG ENSGALG00000028409 199.50 1605.88 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
95. HMGN5 ENSGALG00000007131 193.43 1557.02 high mobility group nucleosome binding domain 5, transcript variant X1
96. ENO1 ENSGALG00000002377 189.09 1522.08 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
97. CRHOA CRHOA 186.49 1501.16
98. ITGB1BP3 ENSGALG00000030120 183.02 1473.22 integrin beta 1 binding protein 3 [Source:NCBI gene;Acc:415448]
99. H3-IX_1 H3-IX_1 178.68 1438.29
100. ENSGALG00000022570 ENSGALG00000022570 175.21 1410.36
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA