Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_1, section s31.

Sample reads: 124,244. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 7406.92 59617.85
2. MT-ATP6 MT-ATP6 3211.33 25847.80
3. MT-CYB MT-CYB 1788.05 14391.91
4. RPLP1 ENSGALG00000030878 1690.78 13608.99 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
5. EEF1A EEF1A 1663.90 13392.63
6. RPS10 ENSGALG00000002813 1260.72 10147.46 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. MT-ND6 MT-ND6 1191.61 9591.20
8. MT-ND4 MT-ND4 1178.81 9488.17
9. MT-CO1 MT-CO1 1134.01 9127.58
10. RPS3A ENSGALG00000010077 1057.22 8509.50 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
11. gga-mir-3527 gga-mir-3527 1026.50 8262.24
12. RPS8 ENSGALG00000010124 986.82 7942.85 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
13. RPS12 ENSGALG00000013990 956.10 7695.59 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
14. MT-ND5 MT-ND5 849.87 6840.55
15. RPS29 ENSGALG00000012229 719.32 5789.76 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
16. RPLP0 ENSGALG00000023294 716.76 5769.16 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
17. RPL38 ENSGALG00000001465 707.80 5697.04 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
18. GAPDH ENSGALG00000014442 697.56 5614.62 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
19. RPL15 ENSGALG00000011290 695.00 5594.01 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
20. RPL35A ENSGALG00000007611, ENSGALG00000041230 670.68 5398.26 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
21. RPS15A ENSGALG00000006771 666.84 5367.35 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
22. MT-ND3 MT-ND3 652.76 5254.03
23. RPL35 ENSGALG00000035677 648.92 5223.12 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
24. RPL26 RPL26 636.12 5120.09
25. RPL6 ENSGALG00000004818 625.88 5037.67 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
26. RPL7A ENSGALG00000003197 620.76 4996.46 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
27. RPL29 ENSGALG00000026978 619.48 4986.16 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
28. RPL14 ENSGALG00000043379 618.20 4975.85 ribosomal protein L14
29. RPL23A ENSGALG00000003966 605.40 4872.83 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
30. RPL23 ENSGALG00000001634 595.16 4790.41 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
31. RPL36AL ENSGALG00000004952 578.53 4656.55 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
32. RPL8 ENSGALG00000016232 578.53 4656.55 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
33. RPS21 ENSGALG00000005338 574.69 4625.65 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
34. RPL27 ENSGALG00000002837 559.33 4502.01 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
35. RPL27A ENSGALG00000005948 547.81 4409.29 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
36. RPL18A 542.69 4368.08 ribosomal protein L18a
37. RPS23 ENSGALG00000015617 536.29 4316.57 ribosomal protein S23
38. RPLP2 ENSGALG00000034811 529.89 4265.05 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
39. RPS14 ENSGALG00000004588 513.25 4131.12 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
40. RPSA 494.05 3976.58 ribosomal protein SA
41. RPS11 ENSGALG00000017299 485.09 3904.46 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
42. RPS20 ENSGALG00000014432 462.05 3719.01 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
43. gga-mir-3533 ENSGALG00000027736 462.05 3719.01 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
44. RPL21 ENSGALG00000027035 459.49 3698.41 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
45. RPS4 RPS4 449.25 3615.99
46. RPL4 ENSGALG00000007711 445.41 3585.08 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
47. TMSB4X ENSGALG00000026383 442.85 3564.47 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
48. MDK ENSGALG00000008367 441.57 3554.17 midkine [Source:NCBI gene;Acc:423196]
49. MT-ND1 MT-ND1 441.57 3554.17
50. RPL32 ENSGALG00000027142 437.73 3523.26 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
51. RPL19 ENSGALG00000001658 435.17 3502.66 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
52. RPS7 ENSGALG00000016392 435.17 3502.66 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
53. TCEB3 ENSGALG00000034625 414.70 3337.90 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
54. RPS2 ENSGALG00000005490 410.86 3306.99 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
55. RPL13 ENSGALG00000006179 408.30 3286.38 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
56. RPS15 ENSGALG00000015195 404.46 3255.47 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
57. RPS25 ENSGALG00000007699 403.18 3245.17 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
58. RPL37 ENSGALG00000014833 398.06 3203.96 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
59. RPL12 ENSGALG00000008806 392.94 3162.75 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
60. RPS6 ENSGALG00000015082 387.82 3121.54 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
61. RPL31 ENSGALG00000016775 375.02 3018.51 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
62. RPS16 ENSGALG00000026490 357.10 2874.28 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
63. RPL24 ENSGALG00000015339 351.98 2833.07 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
64. EEF1B2 ENSGALG00000008590 350.70 2822.76 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
65. RPS24 ENSGALG00000004871 349.42 2812.46 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
66. PPIA ENSGALG00000028600 334.06 2688.83 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
67. RPL10A ENSGALG00000002644 334.06 2688.83 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
68. RPS17 ENSGALG00000002157 330.22 2657.92 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
69. ATP5G3 328.94 2647.62 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
70. STMN1 ENSGALG00000001475 327.66 2637.32 stathmin 1 [Source:NCBI gene;Acc:396057]
71. RPS27A ENSGALG00000036790 314.86 2534.29 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
72. EEF1D 312.30 2513.68 eukaryotic translation elongation factor 1 delta, transcript variant X13
73. NME2 ENSGALG00000002932 311.02 2503.38 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
74. RPS13 ENSGALG00000006096 309.74 2493.08 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
75. RPL5 ENSGALG00000005922 307.18 2472.47 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
76. RPS3 ENSGALG00000017330 303.34 2441.57 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
77. ANP32B ENSGALG00000037483 287.98 2317.93 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
78. ENSGALG00000018384 ENSGALG00000018384 282.86 2276.72
79. HMGN5 ENSGALG00000007131 272.62 2194.30 high mobility group nucleosome binding domain 5, transcript variant X1
80. ENSGALG00000002696 ENSGALG00000002696 267.50 2153.09
81. ENO1 ENSGALG00000002377 264.94 2132.49 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
82. RPL7 ENSGALG00000035252 264.94 2132.49 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
83. RAN ENSGALG00000002569 255.98 2060.37 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
84. TXN ENSGALG00000015704 253.42 2039.76 thioredoxin [Source:NCBI gene;Acc:396437]
85. GNB2L1 ENSGALG00000000122 250.87 2019.24 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
86. CIRBP ENSGALG00000030918 245.75 1978.03 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
87. TPT1 ENSGALG00000028872 241.91 1947.12 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
88. SNRPD1 ENSGALG00000041334 238.07 1916.21 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
89. ENSGALG00000028649 ENSGALG00000028649 232.95 1875.00
90. H3-IX H3-IX 231.67 1864.70
91. RPL9 ENSGALG00000000150 231.67 1864.70 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
92. RPL3 ENSGALG00000012172 229.11 1844.09 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
93. ACTG1_1 ENSGALG00000001381 227.83 1833.79 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
94. ITGB1BP3 ENSGALG00000030120 220.15 1771.97 integrin beta 1 binding protein 3 [Source:NCBI gene;Acc:415448]
95. RPS28 ENSGALG00000024398 217.59 1751.37 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
96. HMGN2 HMGN2 216.31 1741.07
97. ZNF593 ENSGALG00000000542 212.47 1710.16 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
98. ENSGALG00000028992 ENSGALG00000028992 211.19 1699.86
99. RPL36 ENSGALG00000000474 206.07 1658.64 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
100. COX7C ENSGALG00000027963 204.79 1648.34 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA