Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_1, section s29.

Sample reads: 124,235. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 8012.90 64504.32
2. MT-ATP6 MT-ATP6 3113.00 25059.83
3. MT-CYB MT-CYB 1826.67 14704.80
4. RPLP1 ENSGALG00000030878 1761.38 14179.21 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
5. EEF1A EEF1A 1320.85 10632.92
6. RPS3A ENSGALG00000010077 1308.84 10536.24 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
7. MT-ND4 MT-ND4 1179.01 9491.10
8. MT-ND6 MT-ND6 1121.97 9031.92
9. RPS10 ENSGALG00000002813 1082.20 8711.77 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. RPS12 ENSGALG00000013990 1056.68 8506.34 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
11. MT-CO1 MT-CO1 1042.42 8391.54
12. RPLP0 ENSGALG00000023294 1035.67 8337.20 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
13. MT-ND5 MT-ND5 921.59 7418.85
14. RPS29 ENSGALG00000012229 885.57 7128.89 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
15. RPL15 ENSGALG00000011290 828.53 6669.72 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
16. RPS8 ENSGALG00000010124 805.27 6482.47 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
17. GAPDH ENSGALG00000014442 744.48 5993.11 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
18. RPS21 ENSGALG00000005338 732.47 5896.43 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
19. RPL35A ENSGALG00000007611, ENSGALG00000041230 710.71 5721.26 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
20. RPL26 RPL26 702.45 5654.76
21. RPL27 ENSGALG00000002837 691.95 5570.24 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
22. RPL14 ENSGALG00000043379 680.69 5479.59 ribosomal protein L14
23. RPL8 ENSGALG00000016232 673.93 5425.18 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
24. RPLP2 ENSGALG00000034811 651.42 5243.97 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
25. MT-ND3 MT-ND3 648.42 5219.82
26. RPL13 ENSGALG00000006179 648.42 5219.82 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
27. RPL38 ENSGALG00000001465 640.91 5159.36 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
28. RPL23 ENSGALG00000001634 631.16 5080.88 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
29. TMSB4X ENSGALG00000026383 628.90 5062.68 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
30. gga-mir-3527 gga-mir-3527 622.15 5008.34
31. RPS15A ENSGALG00000006771 619.90 4990.23 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
32. RPS23 ENSGALG00000015617 583.88 4700.27 ribosomal protein S23
33. RPL36AL ENSGALG00000004952 580.87 4676.04 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
34. MT-ND1 MT-ND1 573.37 4615.66
35. RPL23A ENSGALG00000003966 572.62 4609.62 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
36. RPL4 ENSGALG00000007711 571.87 4603.59 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
37. RPL7A ENSGALG00000003197 570.37 4591.51 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
38. RPL29 ENSGALG00000026978 535.84 4313.54 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
39. RPL19 ENSGALG00000001658 524.59 4222.98 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
40. HMGB2 ENSGALG00000010745 523.84 4216.94 high mobility group box 2 [Source:NCBI gene;Acc:396482]
41. RPL6 ENSGALG00000004818 518.58 4174.60 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
42. MDK ENSGALG00000008367 517.83 4168.56 midkine [Source:NCBI gene;Acc:423196]
43. RPL27A ENSGALG00000005948 513.33 4132.34 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
44. RPL35 ENSGALG00000035677 490.07 3945.09 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
45. RPL21 ENSGALG00000027035 470.55 3787.96 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
46. RPL18A 462.30 3721.54 ribosomal protein L18a
47. RPS14 ENSGALG00000004588 457.79 3685.24 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
48. RPL32 ENSGALG00000027142 442.78 3564.41 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
49. RPS4 RPS4 440.53 3546.29
50. RPSA 433.78 3491.95 ribosomal protein SA
51. gga-mir-3533 ENSGALG00000027736 432.28 3479.88 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
52. RPS15 ENSGALG00000015195 421.02 3389.24 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
53. RPS7 ENSGALG00000016392 417.27 3359.05 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
54. PPIA ENSGALG00000028600 416.52 3353.01 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
55. RPS2 ENSGALG00000005490 400.76 3226.14 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
56. RPL12 ENSGALG00000008806 397.01 3195.95 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
57. RPS25 ENSGALG00000007699 391.00 3147.57 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
58. RAN ENSGALG00000002569 382.75 3081.16 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
59. RPS20 ENSGALG00000014432 382.75 3081.16 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
60. ATP5G3 369.99 2978.44 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
61. RPL31 ENSGALG00000016775 368.49 2966.37 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
62. ENSGALG00000018384 ENSGALG00000018384 366.99 2954.29
63. RPS24 ENSGALG00000004871 345.22 2779.04 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
64. RPL24 ENSGALG00000015339 332.46 2676.32 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
65. RPS27A ENSGALG00000036790 332.46 2676.32 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
66. RPS6 ENSGALG00000015082 332.46 2676.32 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
67. RPL37 ENSGALG00000014833 330.21 2658.21 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
68. RPL10A ENSGALG00000002644 325.71 2621.98 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
69. SNRPD1 ENSGALG00000041334 323.46 2603.87 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
70. RPS16 ENSGALG00000026490 318.96 2567.65 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
71. CIRBP ENSGALG00000030918 310.70 2501.15 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
72. ENSGALG00000028649 ENSGALG00000028649 309.95 2495.12
73. RPS28 ENSGALG00000024398 306.95 2470.97 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
74. NME2 ENSGALG00000002932 305.45 2458.89 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
75. RPS13 ENSGALG00000006096 300.19 2416.55 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
76. TCEB3 ENSGALG00000034625 299.44 2410.51 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
77. RPS11 ENSGALG00000017299 297.19 2392.40 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
78. ENSGALG00000002696 ENSGALG00000002696 273.18 2199.12
79. RPS3 ENSGALG00000017330 273.18 2199.12 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
80. STMN1 ENSGALG00000001475 273.18 2199.12 stathmin 1 [Source:NCBI gene;Acc:396057]
81. EEF1B2 ENSGALG00000008590 270.92 2180.92 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
82. RPL7 ENSGALG00000035252 267.92 2156.77 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
83. ACTG1_1 ENSGALG00000001381 267.17 2150.73 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
84. ENSGALG00000028992 ENSGALG00000028992 265.67 2138.66
85. HMGN2 HMGN2 265.67 2138.66
86. ANP32B ENSGALG00000037483 262.67 2114.51 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
87. GNB2L1 ENSGALG00000000122 255.91 2060.09 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
88. RPL36 ENSGALG00000000474 248.41 1999.72 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
89. RPL9 ENSGALG00000000150 247.66 1993.68 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
90. RPL3 ENSGALG00000012172 244.66 1969.53 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
91. EEF1D 240.15 1933.22 eukaryotic translation elongation factor 1 delta, transcript variant X13
92. RPS17 ENSGALG00000002157 234.15 1884.92 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
93. ITGB1BP3 ENSGALG00000030120 223.64 1800.32 integrin beta 1 binding protein 3 [Source:NCBI gene;Acc:415448]
94. RPL5 ENSGALG00000005922 221.39 1782.20 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
95. HMGN5 ENSGALG00000007131 217.64 1752.01 high mobility group nucleosome binding domain 5, transcript variant X1
96. TPT1 ENSGALG00000028872 212.39 1709.75 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
97. H3-IX H3-IX 203.38 1637.22
98. ENO1 ENSGALG00000002377 202.63 1631.18 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
99. RPL30 ENSGALG00000029897 196.63 1582.88 ribosomal protein L30 [Source:NCBI gene;Acc:425416]
100. H3-IX_1 H3-IX_1 195.88 1576.85
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA