Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_1, section s22.

Sample reads: 124,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 9899.33 79686.42
2. MT-ATP6 MT-ATP6 2283.48 18381.28
3. RPLP1 ENSGALG00000030878 1696.18 13653.70 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
4. MT-CYB MT-CYB 1662.26 13380.66
5. EEF1A EEF1A 1388.75 11178.99
6. RPS10 ENSGALG00000002813 1217.01 9796.54 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. RPS3A ENSGALG00000010077 1138.56 9165.04 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
8. MT-CO1 MT-CO1 1047.39 8431.15
9. RPL15 ENSGALG00000011290 935.02 7526.61 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
10. MT-ND4 MT-ND4 924.42 7441.28
11. RPS12 ENSGALG00000013990 903.22 7270.63 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
12. MT-ND5 MT-ND5 867.17 6980.44
13. RPS8 ENSGALG00000010124 820.53 6605.00 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
14. GAPDH ENSGALG00000014442 816.29 6570.87 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
15. MT-ND6 MT-ND6 795.08 6400.14
16. MT-ND3 MT-ND3 765.40 6161.22
17. RPS29 ENSGALG00000012229 746.32 6007.64 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
18. RPL38 ENSGALG00000001465 744.20 5990.57 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
19. RPL8 ENSGALG00000016232 714.52 5751.66 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. RPS21 ENSGALG00000005338 712.40 5734.59 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
21. gga-mir-3527 gga-mir-3527 691.19 5563.86
22. RPLP0 ENSGALG00000023294 667.87 5376.14 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
23. ENSGALG00000018384 ENSGALG00000018384 642.43 5171.35
24. RPS15A ENSGALG00000006771 636.07 5120.16 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
25. RPLP2 ENSGALG00000034811 627.59 5051.90 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
26. RPL6 ENSGALG00000004818 621.23 5000.70 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
27. RPL35A ENSGALG00000007611, ENSGALG00000041230 619.11 4983.64 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
28. RPL23A ENSGALG00000003966 587.30 4727.58 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
29. RPL7A ENSGALG00000003197 587.30 4727.58 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
30. RPS14 ENSGALG00000004588 580.94 4676.38 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
31. RPL26 RPL26 574.58 4625.18
32. RPL36AL ENSGALG00000004952 563.98 4539.86 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
33. RPL14 ENSGALG00000043379 553.38 4454.53 ribosomal protein L14
34. RPL19 ENSGALG00000001658 551.26 4437.47 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
35. RPL29 ENSGALG00000026978 547.02 4403.33 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
36. RPL18A 540.66 4352.14 ribosomal protein L18a
37. RPL27 ENSGALG00000002837 530.06 4266.81 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
38. TMSB4X ENSGALG00000026383 525.82 4232.68 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
39. RPL27A ENSGALG00000005948 508.85 4096.08 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
40. RPL4 ENSGALG00000007711 508.85 4096.08 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
41. RPS23 ENSGALG00000015617 508.85 4096.08 ribosomal protein S23
42. RPL23 ENSGALG00000001634 481.29 3874.23 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
43. RPL32 ENSGALG00000027142 479.17 3857.16 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
44. RPL35 ENSGALG00000035677 477.05 3840.10 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
45. RPS6 ENSGALG00000015082 470.69 3788.90 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
46. RPL13 ENSGALG00000006179 449.49 3618.25 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
47. RPS16 ENSGALG00000026490 449.49 3618.25 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
48. RPSA 441.01 3549.99 ribosomal protein SA
49. RPL21 ENSGALG00000027035 434.65 3498.79 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
50. gga-mir-3533 ENSGALG00000027736 428.29 3447.60 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
51. NME2 ENSGALG00000002932 426.17 3430.53 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
52. RPS24 ENSGALG00000004871 379.52 3055.01 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
53. ATP5G3 377.40 3037.95 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
54. RPS4 RPS4 371.04 2986.75
55. RPS25 ENSGALG00000007699 364.68 2935.56 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
56. STMN1 ENSGALG00000001475 356.20 2867.30 stathmin 1 [Source:NCBI gene;Acc:396057]
57. RPS20 ENSGALG00000014432 349.84 2816.10 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
58. RPL31 ENSGALG00000016775 345.60 2781.97 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
59. RPS11 ENSGALG00000017299 345.60 2781.97 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
60. RPL37 ENSGALG00000014833 341.36 2747.84 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
61. RPS2 ENSGALG00000005490 341.36 2747.84 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
62. RPS13 ENSGALG00000006096 332.88 2679.58 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
63. MDK ENSGALG00000008367 330.76 2662.51 midkine [Source:NCBI gene;Acc:423196]
64. MT-ND1 MT-ND1 330.76 2662.51
65. PPIA ENSGALG00000028600 330.76 2662.51 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
66. RPS7 ENSGALG00000016392 330.76 2662.51 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
67. COX6C ENSGALG00000035996 320.15 2577.10 cytochrome c oxidase subunit 6C [Source:NCBI gene;Acc:420243]
68. RPS27A ENSGALG00000036790 313.79 2525.91 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
69. RPS3 ENSGALG00000017330 311.67 2508.84 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
70. RAN ENSGALG00000002569 307.43 2474.71 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
71. TCEB3 ENSGALG00000034625 305.31 2457.65 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
72. RPS15 ENSGALG00000015195 303.19 2440.58 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
73. RPL36 ENSGALG00000000474 290.47 2338.19 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
74. RPL9 ENSGALG00000000150 290.47 2338.19 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
75. RPS28 ENSGALG00000024398 290.47 2338.19 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
76. ENSGALG00000002696 ENSGALG00000002696 288.35 2321.12
77. RPL12 ENSGALG00000008806 277.75 2235.80 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
78. RPL3 ENSGALG00000012172 273.51 2201.67 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
79. RPL24 ENSGALG00000015339 271.39 2184.60 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
80. RPL5 ENSGALG00000005922 271.39 2184.60 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
81. ENSGALG00000028992 ENSGALG00000028992 258.67 2082.21
82. HMGN5 ENSGALG00000007131 258.67 2082.21 high mobility group nucleosome binding domain 5, transcript variant X1
83. GNB2L1 ENSGALG00000000122 256.55 2065.14 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
84. SNRPD1 ENSGALG00000041334 243.83 1962.75 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
85. RPL7 ENSGALG00000035252 239.59 1928.62 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
86. HMGB2 ENSGALG00000010745 235.34 1894.41 high mobility group box 2 [Source:NCBI gene;Acc:396482]
87. MIF ENSGALG00000006326 226.86 1826.15 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
88. RPL10A ENSGALG00000002644 226.86 1826.15 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
89. TXN ENSGALG00000015704 222.62 1792.02 thioredoxin [Source:NCBI gene;Acc:396437]
90. COX7C ENSGALG00000027963 214.14 1723.76 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
91. HMGN2 HMGN2 214.14 1723.76
92. ACTG1_1 ENSGALG00000001381 205.66 1655.50 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
93. ANP32B ENSGALG00000037483 205.66 1655.50 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
94. MT-ND2 MT-ND2 201.42 1621.37
95. RPL22 ENSGALG00000000719 201.42 1621.37 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
96. EEF1B2 ENSGALG00000008590 199.30 1604.30 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
97. EEF1D 199.30 1604.30 eukaryotic translation elongation factor 1 delta, transcript variant X13
98. H3-IX_1 H3-IX_1 199.30 1604.30
99. ENSGALG00000028649 ENSGALG00000028649 197.18 1587.24
100. ENO1 ENSGALG00000002377 195.06 1570.17 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA