Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_1, section s21.

Sample reads: 124,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 8162.22 65702.93
2. MT-ATP6 MT-ATP6 2795.40 22501.96
3. MT-CYB MT-CYB 1786.53 14380.92
4. RPLP1 ENSGALG00000030878 1673.56 13471.55 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
5. EEF1A EEF1A 1360.92 10954.92
6. RPS10 ENSGALG00000002813 1039.08 8364.22 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. RPS3A ENSGALG00000010077 991.13 7978.24 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
8. MT-ND6 MT-ND6 939.90 7565.86
9. RPS29 ENSGALG00000012229 903.12 7269.79 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
10. MT-CO1 MT-CO1 822.99 6624.77
11. MT-ND5 MT-ND5 812.48 6540.17
12. RPS8 ENSGALG00000010124 759.28 6111.93 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
13. RPL35A ENSGALG00000007611, ENSGALG00000041230 747.45 6016.70 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
14. ENSGALG00000018384 ENSGALG00000018384 746.14 6006.16
15. RPLP0 ENSGALG00000023294 738.92 5948.04 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
16. RPL15 ENSGALG00000011290 732.35 5895.15 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
17. RPL38 ENSGALG00000001465 728.41 5863.44 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
18. RPS12 ENSGALG00000013990 727.09 5852.81 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
19. gga-mir-3527 gga-mir-3527 679.15 5466.91
20. MT-ND4 MT-ND4 654.19 5265.99
21. RPL26 RPL26 653.53 5260.68
22. GAPDH ENSGALG00000014442 650.90 5239.51 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
23. RPS21 ENSGALG00000005338 624.63 5028.05 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
24. RPL6 ENSGALG00000004818 615.43 4953.99 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
25. RPL27 ENSGALG00000002837 601.64 4842.98 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
26. RPL8 ENSGALG00000016232 587.85 4731.98 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
27. RPL23 ENSGALG00000001634 574.71 4626.21 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
28. RPL23A ENSGALG00000003966 573.40 4615.66 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
29. RPL14 ENSGALG00000043379 556.98 4483.49 ribosomal protein L14
30. RPLP2 ENSGALG00000034811 549.75 4425.29 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
31. TMSB4X ENSGALG00000026383 549.75 4425.29 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
32. RPL36AL ENSGALG00000004952 545.16 4388.34 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
33. RPL18A 544.50 4383.03 ribosomal protein L18a
34. RPL29 ENSGALG00000026978 539.90 4346.00 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
35. RPL27A ENSGALG00000005948 518.23 4171.56 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
36. RPL4 ENSGALG00000007711 517.57 4166.25 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
37. RPL19 ENSGALG00000001658 495.24 3986.50 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
38. RPL7A ENSGALG00000003197 492.61 3965.33 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
39. RPS23 ENSGALG00000015617 479.47 3859.56 ribosomal protein S23
40. RPS15A ENSGALG00000006771 461.74 3716.84 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
41. RPL13 ENSGALG00000006179 457.14 3679.81 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
42. MT-ND3 MT-ND3 452.54 3642.78
43. RPS14 ENSGALG00000004588 442.04 3558.26 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
44. gga-mir-3533 ENSGALG00000027736 434.81 3500.06 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
45. HMGB2 ENSGALG00000010745 424.96 3420.77 high mobility group box 2 [Source:NCBI gene;Acc:396482]
46. ATP5G3 411.82 3315.00 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
47. RPL37 ENSGALG00000014833 401.97 3235.71 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
48. PPIA ENSGALG00000028600 400.00 3219.86 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
49. RPL21 ENSGALG00000027035 378.98 3050.65 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
50. RPS4 RPS4 375.04 3018.94
51. RPS16 ENSGALG00000026490 374.38 3013.62 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
52. RPL35 ENSGALG00000035677 371.10 2987.22 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
53. RPS25 ENSGALG00000007699 370.44 2981.91 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
54. RPL32 ENSGALG00000027142 369.79 2976.68 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
55. RPSA 367.82 2960.82 ribosomal protein SA
56. RPL31 ENSGALG00000016775 360.59 2902.62 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
57. NME2 ENSGALG00000002932 346.14 2786.30 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
58. RPL12 ENSGALG00000008806 336.29 2707.01 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
59. MT-ND1 MT-ND1 333.66 2685.84
60. MDK ENSGALG00000008367 331.03 2664.67 midkine [Source:NCBI gene;Acc:423196]
61. RPS7 ENSGALG00000016392 331.03 2664.67 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
62. RPS15 ENSGALG00000015195 320.53 2580.15 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
63. RPS20 ENSGALG00000014432 315.27 2537.81 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
64. RPS13 ENSGALG00000006096 314.61 2532.50 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
65. RPS11 ENSGALG00000017299 313.96 2527.26 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
66. RPS24 ENSGALG00000004871 309.36 2490.24 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
67. STMN1 ENSGALG00000001475 308.70 2484.92 stathmin 1 [Source:NCBI gene;Acc:396057]
68. RPS27A ENSGALG00000036790 300.16 2416.18 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
69. RPS28 ENSGALG00000024398 300.16 2416.18 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
70. TCEB3 ENSGALG00000034625 300.16 2416.18 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
71. RPL24 ENSGALG00000015339 296.22 2384.46 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
72. RPS6 ENSGALG00000015082 289.65 2331.58 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
73. RPL7 ENSGALG00000035252 279.80 2252.29 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
74. RAN ENSGALG00000002569 275.86 2220.57 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
75. RPS2 ENSGALG00000005490 275.86 2220.57 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
76. ENSGALG00000028649 ENSGALG00000028649 268.64 2162.46
77. CIRBP ENSGALG00000030918 266.67 2146.60 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
78. SNRPD1 ENSGALG00000041334 262.73 2114.88 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
79. RPL10A ENSGALG00000002644 261.41 2104.26 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
80. EEF1D 252.22 2030.28 eukaryotic translation elongation factor 1 delta, transcript variant X13
81. ENSGALG00000002696 ENSGALG00000002696 243.68 1961.54
82. RPL9 ENSGALG00000000150 242.36 1950.91 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
83. HMGN5 ENSGALG00000007131 238.42 1919.19 high mobility group nucleosome binding domain 5, transcript variant X1
84. RPL5 ENSGALG00000005922 236.45 1903.34 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
85. HSPA8 ENSGALG00000006512 227.26 1829.36 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
86. ENSGALG00000028992 ENSGALG00000028992 226.60 1824.05
87. HMGN2 HMGN2 225.94 1818.74
88. ANP32B ENSGALG00000037483 225.29 1813.50 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
89. RPS3 ENSGALG00000017330 223.97 1802.88 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
90. ITGB1BP3 ENSGALG00000030120 222.00 1787.02 integrin beta 1 binding protein 3 [Source:NCBI gene;Acc:415448]
91. RPL36 ENSGALG00000000474 219.38 1765.93 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
92. EEF1B2 ENSGALG00000008590 216.09 1739.45 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
93. SET ENSGALG00000004701 206.24 1660.16 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
94. ACTG1_1 ENSGALG00000001381 204.27 1644.30 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
95. ENSGALG00000018386 ENSGALG00000018386 203.61 1638.99
96. H3-IX H3-IX 202.96 1633.75
97. H3-IX_1 H3-IX_1 202.96 1633.75
98. SEC61G ENSGALG00000037863 200.99 1617.90 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
99. EIF3J ENSGALG00000008187 200.33 1612.58 eukaryotic translation initiation factor 3 subunit J [Source:NCBI gene;Acc:415573]
100. ENO1 ENSGALG00000002377 199.67 1607.27 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA