Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_1, section s20.

Sample reads: 124,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 8592.08 69166.14
2. MT-ATP6 MT-ATP6 3468.62 27922.35
3. MT-CYB MT-CYB 2177.42 17528.20
4. RPLP1 ENSGALG00000030878 1637.04 13178.15 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
5. MT-ND6 MT-ND6 1339.51 10783.04
6. MT-ND5 MT-ND5 1134.17 9130.05
7. RPS3A ENSGALG00000010077 1092.21 8792.28 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
8. EEF1A EEF1A 1087.12 8751.30
9. RPS29 ENSGALG00000012229 1046.43 8423.75 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
10. MT-ND4 MT-ND4 1038.17 8357.26
11. RPS10 ENSGALG00000002813 958.70 7717.52 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
12. MT-CO1 MT-CO1 956.16 7697.08
13. gga-mir-3527 gga-mir-3527 784.51 6315.30
14. RPL15 ENSGALG00000011290 783.87 6310.14 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
15. RPL35A ENSGALG00000007611, ENSGALG00000041230 748.27 6023.56 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
16. RPS8 ENSGALG00000010124 743.82 5987.74 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
17. RPL38 ENSGALG00000001465 715.21 5757.43 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
18. RPS12 ENSGALG00000013990 703.13 5660.19 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
19. ENSGALG00000018384 ENSGALG00000018384 674.52 5429.88
20. GAPDH ENSGALG00000014442 671.98 5409.43 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
21. RPLP0 ENSGALG00000023294 662.45 5332.71 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
22. RPL6 ENSGALG00000004818 659.90 5312.19 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
23. RPS21 ENSGALG00000005338 613.49 4938.59 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
24. RPL23 ENSGALG00000001634 595.69 4795.30 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
25. RPL23A ENSGALG00000003966 591.88 4764.63 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
26. RPL8 ENSGALG00000016232 550.55 4431.92 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
27. MT-ND3 MT-ND3 541.65 4360.28
28. RPL36AL ENSGALG00000004952 530.21 4268.18 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
29. RPL29 ENSGALG00000026978 524.49 4222.14 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
30. RPL35 ENSGALG00000035677 507.32 4083.92 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
31. RPLP2 ENSGALG00000034811 506.69 4078.85 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
32. RPL32 ENSGALG00000027142 490.79 3950.85 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
33. ATP5G3 481.89 3879.21 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
34. RPL26 RPL26 480.62 3868.99
35. RPL14 ENSGALG00000043379 478.72 3853.69 ribosomal protein L14
36. RPL19 ENSGALG00000001658 468.54 3771.74 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
37. RPL7A ENSGALG00000003197 466.64 3756.45 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
38. RPL27 ENSGALG00000002837 465.36 3746.14 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
39. gga-mir-3533 ENSGALG00000027736 460.91 3710.32 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
40. RPS15A ENSGALG00000006771 456.46 3674.50 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
41. RPS11 ENSGALG00000017299 452.65 3643.83 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
42. MT-ND1 MT-ND1 445.02 3582.41
43. PPIA ENSGALG00000028600 432.94 3485.16 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
44. RPS14 ENSGALG00000004588 422.77 3403.29 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
45. RPL4 ENSGALG00000007711 416.41 3352.10 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
46. TMSB4X ENSGALG00000026383 416.41 3352.10 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
47. RPS23 ENSGALG00000015617 402.43 3239.56 ribosomal protein S23
48. RPS25 ENSGALG00000007699 390.98 3147.38 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
49. HBG1 HBG1 384.63 3096.27
50. RPS13 ENSGALG00000006096 383.99 3091.11 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
51. RPS7 ENSGALG00000016392 383.35 3085.96 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
52. RPL18A 382.72 3080.89 ribosomal protein L18a
53. RPL27A ENSGALG00000005948 373.18 3004.09 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
54. RPS16 ENSGALG00000026490 369.37 2973.42 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
55. RPS4 RPS4 369.37 2973.42
56. RPL21 ENSGALG00000027035 368.10 2963.20 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
57. NME2 ENSGALG00000002932 364.28 2932.45 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
58. RPSA 361.74 2912.00 ribosomal protein SA
59. RPL37 ENSGALG00000014833 357.29 2876.18 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
60. RPS2 ENSGALG00000005490 344.57 2773.78 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
61. RPL31 ENSGALG00000016775 342.67 2758.49 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
62. RPL13 ENSGALG00000006179 341.39 2748.19 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
63. RPS6 ENSGALG00000015082 338.85 2727.74 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
64. RPS15 ENSGALG00000015195 338.22 2722.67 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
65. RPS20 ENSGALG00000014432 335.67 2702.14 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
66. HBZ ENSGALG00000023740 331.86 2671.47 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
67. RPL24 ENSGALG00000015339 331.86 2671.47 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
68. TCEB3 ENSGALG00000034625 323.59 2604.90 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
69. HMGB2 ENSGALG00000010745 319.14 2569.07 high mobility group box 2 [Source:NCBI gene;Acc:396482]
70. STMN1 ENSGALG00000001475 315.96 2543.47 stathmin 1 [Source:NCBI gene;Acc:396057]
71. MDK ENSGALG00000008367 302.61 2436.01 midkine [Source:NCBI gene;Acc:423196]
72. HMGN2 HMGN2 293.08 2359.29
73. RPS24 ENSGALG00000004871 289.90 2333.69 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
74. SNRPD1 ENSGALG00000041334 285.45 2297.87 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
75. RPS27A ENSGALG00000036790 279.73 2251.82 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
76. RAN ENSGALG00000002569 278.46 2241.60 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
77. GNB2L1 ENSGALG00000000122 274.64 2210.85 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
78. ENSGALG00000018386 ENSGALG00000018386 274.01 2205.78
79. HMGN5 ENSGALG00000007131 271.46 2185.25 high mobility group nucleosome binding domain 5, transcript variant X1
80. RPS3 ENSGALG00000017330 267.01 2149.43 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
81. EEF1D 265.74 2139.20 eukaryotic translation elongation factor 1 delta, transcript variant X13
82. ACTG1_1 ENSGALG00000001381 255.57 2057.34 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
83. CIRBP ENSGALG00000030918 253.66 2041.96 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
84. HBE 247.30 1990.76 hemoglobin subunit epsilon
85. RPL12 ENSGALG00000008806 244.76 1970.32 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
86. TXN ENSGALG00000015704 243.49 1960.09 thioredoxin [Source:NCBI gene;Acc:396437]
87. RPL7 ENSGALG00000035252 235.23 1893.60 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
88. RPL5 ENSGALG00000005922 233.95 1883.29 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
89. ENSGALG00000028992 ENSGALG00000028992 232.68 1873.07
90. ANP32B ENSGALG00000037483 232.05 1868.00 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
91. EEF1B2 ENSGALG00000008590 220.60 1775.83 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
92. ENSGALG00000028649 ENSGALG00000028649 219.97 1770.76
93. MT-ND2 MT-ND2 217.42 1750.23
94. H3-IX H3-IX 212.97 1714.41
95. SNRPG ENSGALG00000028409 212.97 1714.41 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
96. ENSGALG00000002696 ENSGALG00000002696 210.43 1693.96
97. MIF ENSGALG00000006326 209.80 1688.89 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
98. COX6C ENSGALG00000035996 207.25 1668.36 cytochrome c oxidase subunit 6C [Source:NCBI gene;Acc:420243]
99. HSPA8 ENSGALG00000006512 199.62 1606.94 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
100. RPS17 ENSGALG00000002157 194.54 1566.04 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA