Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_1, section s2.

Sample reads: 124,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6953.59 55969.33
2. MT-ATP6 MT-ATP6 2702.21 21750.04
3. RPLP1 ENSGALG00000030878 1512.28 12172.32 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
4. MT-CYB MT-CYB 1460.16 11752.80
5. TMSB4X ENSGALG00000026383 1357.52 10926.66 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
6. RPS3A ENSGALG00000010077 1146.64 9229.29 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
7. RPS10 ENSGALG00000002813 1135.41 9138.90 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
8. EEF1A EEF1A 1054.42 8487.01
9. MT-ND4 MT-ND4 934.15 7518.96
10. MT-ND5 MT-ND5 923.72 7435.01
11. RPS29 ENSGALG00000012229 902.88 7267.27 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
12. RPL35A ENSGALG00000007611, ENSGALG00000041230 860.38 6925.18 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
13. MT-CO1 MT-CO1 857.17 6899.35
14. MT-ND6 MT-ND6 846.75 6815.48
15. RPL15 ENSGALG00000011290 839.53 6757.36 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
16. gga-mir-3527 gga-mir-3527 794.63 6395.96
17. RPS12 ENSGALG00000013990 738.50 5944.17 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
18. RPS8 ENSGALG00000010124 733.69 5905.46 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
19. RPLP0 ENSGALG00000023294 677.56 5453.67 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
20. RPS21 ENSGALG00000005338 658.31 5298.73 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
21. RPL6 ENSGALG00000004818 657.51 5292.29 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
22. GAPDH ENSGALG00000014442 651.10 5240.69 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
23. RPL38 ENSGALG00000001465 648.69 5221.29 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
24. RPL23 ENSGALG00000001634 647.89 5214.86 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
25. RPL27 ENSGALG00000002837 615.01 4950.20 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
26. RPL23A ENSGALG00000003966 589.36 4743.75 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
27. RPL26 RPL26 587.75 4730.79
28. RPL8 ENSGALG00000016232 575.72 4633.96 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
29. RPL29 ENSGALG00000026978 563.70 4537.21 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
30. RPL14 ENSGALG00000043379 550.87 4433.94 ribosomal protein L14
31. RPL19 ENSGALG00000001658 543.65 4375.83 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
32. RPS23 ENSGALG00000015617 534.03 4298.40 ribosomal protein S23
33. ENSGALG00000018384 ENSGALG00000018384 512.38 4124.14
34. RPS4 RPS4 509.97 4104.74
35. RPLP2 ENSGALG00000034811 508.37 4091.86 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
36. gga-mir-3533 ENSGALG00000027736 484.31 3898.20 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
37. RPL4 ENSGALG00000007711 479.50 3859.49 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
38. RPL27A ENSGALG00000005948 469.88 3782.06 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
39. RPL7A ENSGALG00000003197 466.67 3756.22 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
40. RPL36AL ENSGALG00000004952 458.65 3691.67 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
41. RPS15 ENSGALG00000015195 457.85 3685.23 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
42. ATP5G3 453.84 3652.95 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
43. RPL18A 451.44 3633.63 ribosomal protein L18a
44. RPS15A ENSGALG00000006771 448.23 3607.80 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
45. RPL35 ENSGALG00000035677 427.38 3439.97 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
46. MARCKSL1 ENSGALG00000032335 426.58 3433.54 MARCKS like 1 [Source:NCBI gene;Acc:770764]
47. RPL13 ENSGALG00000006179 424.18 3414.22 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
48. RPS13 ENSGALG00000006096 421.77 3394.82 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
49. RPL32 ENSGALG00000027142 403.33 3246.40 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
50. RPS7 ENSGALG00000016392 394.51 3175.40 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
51. RPL21 ENSGALG00000027035 392.10 3156.01 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
52. RPL37 ENSGALG00000014833 390.50 3143.13 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
53. MT-ND3 MT-ND3 389.70 3136.69
54. RPL24 ENSGALG00000015339 389.70 3136.69 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
55. RPS14 ENSGALG00000004588 388.09 3123.73 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
56. MT-ND1 MT-ND1 381.68 3072.14
57. RAN ENSGALG00000002569 371.25 2988.18 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
58. TCEB3 ENSGALG00000034625 368.85 2968.87 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
59. CIRBP ENSGALG00000030918 360.83 2904.31 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
60. RPSA 357.62 2878.48 ribosomal protein SA
61. PPIA ENSGALG00000028600 353.61 2846.20 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
62. RPL12 ENSGALG00000008806 343.19 2762.33 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
63. RPL31 ENSGALG00000016775 343.19 2762.33 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
64. NME2 ENSGALG00000002932 342.39 2755.89 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
65. RPS25 ENSGALG00000007699 335.97 2704.22 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
66. ANP32B ENSGALG00000037483 334.37 2691.34 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
67. RPS16 ENSGALG00000026490 328.76 2646.18 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
68. SNRPD1 ENSGALG00000041334 327.15 2633.22 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
69. MIF ENSGALG00000006326 322.34 2594.51 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
70. ENO1 ENSGALG00000002377 321.54 2588.07 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
71. ENSGALG00000028649 ENSGALG00000028649 315.93 2542.92
72. HMGB2 ENSGALG00000010745 313.52 2523.52 high mobility group box 2 [Source:NCBI gene;Acc:396482]
73. STMN1 ENSGALG00000001475 311.12 2504.20 stathmin 1 [Source:NCBI gene;Acc:396057]
74. RPS24 ENSGALG00000004871 298.29 2400.93 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
75. RPS28 ENSGALG00000024398 287.06 2310.54 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
76. HMGN5 ENSGALG00000007131 281.45 2265.39 high mobility group nucleosome binding domain 5, transcript variant X1
77. RPS11 ENSGALG00000017299 280.65 2258.95 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
78. ENSGALG00000028992 ENSGALG00000028992 275.03 2213.71
79. TXN ENSGALG00000015704 270.22 2175.00 thioredoxin [Source:NCBI gene;Acc:396437]
80. RPS2 ENSGALG00000005490 268.62 2162.12 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
81. RPS20 ENSGALG00000014432 268.62 2162.12 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
82. PKM ENSGALG00000001992 266.21 2142.72 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
83. RPL36 ENSGALG00000000474 259.80 2091.13 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
84. RPS6 ENSGALG00000015082 259.80 2091.13 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
85. RPS27A ENSGALG00000036790 259.00 2084.69 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
86. ACTG1_1 ENSGALG00000001381 251.78 2026.57 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
87. HMGN2 HMGN2 246.17 1981.42
88. HSPA8 ENSGALG00000006512 246.17 1981.42 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
89. LDHB ENSGALG00000035836 244.56 1968.46 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
90. RPL5 ENSGALG00000005922 229.33 1845.87 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
91. SHFM1 SHFM1 227.72 1832.91
92. ALDOC ENSGALG00000026077 224.52 1807.16 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
93. ENSGALG00000002696 ENSGALG00000002696 224.52 1807.16
94. ITGB1BP3 ENSGALG00000030120 218.10 1755.48 integrin beta 1 binding protein 3 [Source:NCBI gene;Acc:415448]
95. RPL10A ENSGALG00000002644 214.09 1723.21 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
96. RPS3 ENSGALG00000017330 214.09 1723.21 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
97. SEC61G ENSGALG00000037863 210.08 1690.93 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
98. EIF3J ENSGALG00000008187 207.68 1671.61 eukaryotic translation initiation factor 3 subunit J [Source:NCBI gene;Acc:415573]
99. UBB ENSGALG00000004509 207.68 1671.61 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
100. RPS17 ENSGALG00000002157 203.67 1639.34 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA