Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_1, section s19.

Sample reads: 124,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 7320.90 58935.54
2. MT-ATP6 MT-ATP6 2774.56 22336.08
3. MT-CYB MT-CYB 1855.66 14938.65
4. RPLP1 ENSGALG00000030878 1612.13 12978.15 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
5. EEF1A EEF1A 1417.31 11409.79
6. MT-ND6 MT-ND6 1093.16 8800.28
7. RPS10 ENSGALG00000002813 1057.98 8517.07 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
8. MT-ND5 MT-ND5 1014.69 8168.57
9. MT-CO1 MT-CO1 1014.15 8164.23
10. RPS3A ENSGALG00000010077 1009.27 8124.94 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
11. MT-ND4 MT-ND4 945.42 7610.93
12. RPS29 ENSGALG00000012229 905.91 7292.86 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
13. gga-mir-3527 gga-mir-3527 870.20 7005.38
14. RPS8 ENSGALG00000010124 807.96 6504.33 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
15. RPL15 ENSGALG00000011290 759.26 6112.28 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
16. RPL35A ENSGALG00000007611, ENSGALG00000041230 680.25 5476.23 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
17. RPS12 ENSGALG00000013990 653.19 5258.38 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
18. RPL38 ENSGALG00000001465 625.59 5036.20 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
19. RPL23 ENSGALG00000001634 620.18 4992.64 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
20. RPLP0 ENSGALG00000023294 586.62 4722.48 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
21. RPS21 ENSGALG00000005338 586.08 4718.13 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
22. GAPDH ENSGALG00000014442 584.46 4705.09 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
23. RPL36AL ENSGALG00000004952 569.85 4587.47 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
24. RPL27 ENSGALG00000002837 564.98 4548.27 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
25. RPLP2 ENSGALG00000034811 562.81 4530.80 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
26. RPL19 ENSGALG00000001658 559.02 4500.29 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
27. MT-ND3 MT-ND3 555.24 4469.86
28. RPL8 ENSGALG00000016232 524.39 4221.50 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
29. RPL29 ENSGALG00000026978 509.24 4099.54 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
30. RPL18A 502.74 4047.21 ribosomal protein L18a
31. RPS15A ENSGALG00000006771 495.17 3986.27 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
32. RPL13 ENSGALG00000006179 493.54 3973.15 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
33. gga-mir-3533 ENSGALG00000027736 489.76 3942.72 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
34. RPL26 RPL26 483.26 3890.39
35. TMSB4X ENSGALG00000026383 481.10 3873.01 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
36. MT-ND1 MT-ND1 477.31 3842.50
37. RPL23A ENSGALG00000003966 472.44 3803.29 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
38. RPS23 ENSGALG00000015617 471.90 3798.94 ribosomal protein S23
39. RPL27A ENSGALG00000005948 470.81 3790.17 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
40. ATP5G3 464.86 3742.27 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
41. RPL7A ENSGALG00000003197 464.86 3742.27 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
42. RPS14 ENSGALG00000004588 454.04 3655.16 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
43. RPS25 ENSGALG00000007699 441.59 3554.94 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
44. RPL14 ENSGALG00000043379 441.05 3550.59 ribosomal protein L14
45. RPL6 ENSGALG00000004818 440.51 3546.24 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
46. RPL32 ENSGALG00000027142 435.10 3502.69 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
47. RPL35 ENSGALG00000035677 425.36 3424.28 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
48. RPL4 ENSGALG00000007711 408.04 3284.85 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
49. HBZ ENSGALG00000023740 404.25 3254.34 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
50. RPS4 RPS4 402.09 3236.95
51. RPL37 ENSGALG00000014833 396.67 3193.32 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
52. RPSA 384.77 3097.52 ribosomal protein SA
53. RPL31 ENSGALG00000016775 380.44 3062.66 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
54. RAN ENSGALG00000002569 371.78 2992.95 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
55. RPS7 ENSGALG00000016392 370.16 2979.90 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
56. TCEB3 ENSGALG00000034625 361.50 2910.19 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
57. CIRBP ENSGALG00000030918 356.09 2866.64 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
58. PPIA ENSGALG00000028600 353.92 2849.17 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
59. RPL21 ENSGALG00000027035 350.13 2818.66 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
60. RPS24 ENSGALG00000004871 343.10 2762.06 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
61. HMGB2 ENSGALG00000010745 339.85 2735.90 high mobility group box 2 [Source:NCBI gene;Acc:396482]
62. RPS15 ENSGALG00000015195 333.36 2683.65 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
63. RPS11 ENSGALG00000017299 327.95 2640.10 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
64. MDK ENSGALG00000008367 325.24 2618.28 midkine [Source:NCBI gene;Acc:423196]
65. RPL24 ENSGALG00000015339 324.70 2613.94 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
66. RPS13 ENSGALG00000006096 314.42 2531.18 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
67. HBG1 HBG1 301.97 2430.95
68. ACTG1_1 ENSGALG00000001381 299.26 2409.14 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
69. ENSGALG00000028649 ENSGALG00000028649 297.10 2391.75
70. RPS16 ENSGALG00000026490 294.39 2369.93 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
71. ENSGALG00000018384 ENSGALG00000018384 293.85 2365.58
72. RPL12 ENSGALG00000008806 291.15 2343.85 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
73. RPS2 ENSGALG00000005490 283.57 2282.83 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
74. RPS27A ENSGALG00000036790 280.87 2261.09 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
75. SNRPD1 ENSGALG00000041334 278.70 2243.62 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
76. RPS20 ENSGALG00000014432 274.91 2213.11 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
77. TXN ENSGALG00000015704 266.79 2147.74 thioredoxin [Source:NCBI gene;Acc:396437]
78. ANP32B ENSGALG00000037483 259.76 2091.15 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
79. RPS6 ENSGALG00000015082 258.68 2082.46 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
80. HMGN2 HMGN2 257.05 2069.33
81. HBE 253.27 2038.90 hemoglobin subunit epsilon
82. NME2 ENSGALG00000002932 253.27 2038.90 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
83. RPL5 ENSGALG00000005922 245.15 1973.53 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
84. RPL10A ENSGALG00000002644 243.52 1960.41 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
85. ENSGALG00000028992 ENSGALG00000028992 237.03 1908.17
86. RPS3 ENSGALG00000017330 237.03 1908.17 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
87. ENO1 ENSGALG00000002377 236.49 1903.82 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
88. RPL7 ENSGALG00000035252 232.70 1873.31 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
89. H3-IX H3-IX 232.16 1868.96
90. HMGN5 ENSGALG00000007131 224.04 1803.59 high mobility group nucleosome binding domain 5, transcript variant X1
91. HSPA8 ENSGALG00000006512 221.88 1786.20 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
92. ENSGALG00000002696 ENSGALG00000002696 219.71 1768.73
93. ITGB1BP3 ENSGALG00000030120 208.89 1681.63 integrin beta 1 binding protein 3 [Source:NCBI gene;Acc:415448]
94. COX6C ENSGALG00000035996 207.81 1672.94 cytochrome c oxidase subunit 6C [Source:NCBI gene;Acc:420243]
95. SNRPG ENSGALG00000028409 207.27 1668.59 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
96. STMN1 ENSGALG00000001475 207.27 1668.59 stathmin 1 [Source:NCBI gene;Acc:396057]
97. EEF1D 204.56 1646.77 eukaryotic translation elongation factor 1 delta, transcript variant X13
98. MIF ENSGALG00000006326 203.48 1638.08 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
99. RPL36 ENSGALG00000000474 200.77 1616.26 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
100. RPL9 ENSGALG00000000150 200.23 1611.91 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA