Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_1, section s15.

Sample reads: 124,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6818.05 54892.91
2. MT-ATP6 MT-ATP6 3208.54 25832.33
3. MT-CYB MT-CYB 2187.01 17607.87
4. RPLP1 ENSGALG00000030878 1368.82 11020.53 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
5. MT-ND5 MT-ND5 1206.42 9713.03
6. EEF1A EEF1A 1128.34 9084.40
7. RPS10 ENSGALG00000002813 1035.35 8335.72 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
8. MT-ND6 MT-ND6 1012.58 8152.40
9. TMSB4X ENSGALG00000026383 980.86 7897.02 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
10. gga-mir-3527 gga-mir-3527 853.71 6873.32
11. RPS29 ENSGALG00000012229 829.58 6679.04 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
12. MT-CO1 MT-CO1 797.87 6423.74
13. MT-ND4 MT-ND4 795.70 6406.27
14. RPS3A ENSGALG00000010077 790.27 6362.56 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
15. RPL35A ENSGALG00000007611, ENSGALG00000041230 769.67 6196.70 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
16. RPS8 ENSGALG00000010124 721.68 5810.33 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
17. RPLP0 ENSGALG00000023294 691.32 5565.90 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
18. RPL15 ENSGALG00000011290 660.69 5319.29 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
19. gga-mir-3533 ENSGALG00000027736 649.84 5231.94 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
20. RPL38 ENSGALG00000001465 630.86 5079.13 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
21. RPL18A 580.98 4677.54 ribosomal protein L18a
22. ENSGALG00000018384 ENSGALG00000018384 577.73 4651.37
23. RPS12 ENSGALG00000013990 572.03 4605.48 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
24. GAPDH ENSGALG00000014442 559.56 4505.08 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
25. RPLP2 ENSGALG00000034811 556.04 4476.74 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
26. RPS21 ENSGALG00000005338 541.13 4356.70 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
27. RPL14 ENSGALG00000043379 527.03 4243.18 ribosomal protein L14
28. RPL23 ENSGALG00000001634 518.63 4175.55 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
29. RPL8 ENSGALG00000016232 518.08 4171.12 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
30. RPL27 ENSGALG00000002837 508.32 4092.54 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
31. RPL23A ENSGALG00000003966 499.65 4022.74 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
32. ATP5G3 492.33 3963.81 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
33. RPL4 ENSGALG00000007711 458.44 3690.95 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
34. RPL6 ENSGALG00000004818 447.87 3605.85 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
35. RPL19 ENSGALG00000001658 444.61 3579.61 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
36. PPIA ENSGALG00000028600 442.99 3566.56 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
37. RPL32 ENSGALG00000027142 442.99 3566.56 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
38. RPL27A ENSGALG00000005948 441.90 3557.79 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
39. RPL35 ENSGALG00000035677 436.48 3514.15 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
40. RPL26 RPL26 432.69 3483.64
41. RPL7A ENSGALG00000003197 422.65 3402.80 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
42. RPS15A ENSGALG00000006771 419.67 3378.81 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
43. RPL36AL ENSGALG00000004952 415.33 3343.87 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
44. MT-ND1 MT-ND1 414.79 3339.52
45. RPL29 ENSGALG00000026978 411.54 3313.36 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
46. RPS4 RPS4 397.44 3199.84
47. RPS14 ENSGALG00000004588 396.36 3191.14 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
48. ENSGALG00000028649 ENSGALG00000028649 381.99 3075.45
49. RPS11 ENSGALG00000017299 378.74 3049.28 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
50. RPS23 ENSGALG00000015617 378.19 3044.85 ribosomal protein S23
51. RAN ENSGALG00000002569 376.30 3029.63 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
52. RPS13 ENSGALG00000006096 362.47 2918.29 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
53. RPS7 ENSGALG00000016392 358.67 2887.69 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
54. RPL12 ENSGALG00000008806 346.47 2789.47 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
55. NME2 ENSGALG00000002932 346.20 2787.30 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
56. RPSA 345.93 2785.12 ribosomal protein SA
57. RPS25 ENSGALG00000007699 337.53 2717.49 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
58. MDK ENSGALG00000008367 326.95 2632.31 midkine [Source:NCBI gene;Acc:423196]
59. RPL24 ENSGALG00000015339 323.43 2603.97 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
60. RPS20 ENSGALG00000014432 309.60 2492.63 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
61. CIRBP ENSGALG00000030918 307.71 2477.41 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
62. HMGB2 ENSGALG00000010745 305.54 2459.94 high mobility group box 2 [Source:NCBI gene;Acc:396482]
63. RPS6 ENSGALG00000015082 304.72 2453.34 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
64. RPL31 ENSGALG00000016775 299.84 2414.05 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
65. TCEB3 ENSGALG00000034625 293.34 2361.71 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
66. RPS15 ENSGALG00000015195 291.71 2348.59 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
67. RPL13 ENSGALG00000006179 289.81 2333.29 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
68. MT-ND3 MT-ND3 286.56 2307.13
69. RPL21 ENSGALG00000027035 281.68 2267.84 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
70. RPS16 ENSGALG00000026490 278.43 2241.67 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
71. RPL37 ENSGALG00000014833 276.26 2224.20 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
72. ACTG1_1 ENSGALG00000001381 270.02 2173.96 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
73. RPS24 ENSGALG00000004871 265.14 2134.67 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
74. HSPA8 ENSGALG00000006512 263.52 2121.63 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
75. HMGN2 HMGN2 262.97 2117.20
76. RPS27A ENSGALG00000036790 261.62 2106.33 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
77. RPS2 ENSGALG00000005490 260.53 2097.56 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
78. SNRPD1 ENSGALG00000041334 260.26 2095.38 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
79. ANP32B ENSGALG00000037483 257.01 2069.22 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
80. TXN ENSGALG00000015704 256.20 2062.70 thioredoxin [Source:NCBI gene;Acc:396437]
81. HMGN5 ENSGALG00000007131 247.25 1990.64 high mobility group nucleosome binding domain 5, transcript variant X1
82. MIF ENSGALG00000006326 246.16 1981.86 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
83. RPL5 ENSGALG00000005922 245.89 1979.69 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
84. RPS28 ENSGALG00000024398 231.52 1863.99 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
85. H3-IX H3-IX 221.49 1783.24
86. SNRPG ENSGALG00000028409 219.87 1770.20 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
87. RPL22 ENSGALG00000000719 219.32 1765.77 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
88. EEF1D 218.51 1759.25 eukaryotic translation elongation factor 1 delta, transcript variant X13
89. RPL10A ENSGALG00000002644 209.02 1682.84 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
90. RPL36 ENSGALG00000000474 205.50 1654.50 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
91. RPL7 ENSGALG00000035252 203.33 1637.03 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
92. RPS3 ENSGALG00000017330 203.33 1637.03 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
93. UBB ENSGALG00000004509 201.70 1623.91 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
94. MT-ND2 MT-ND2 200.08 1610.87
95. ENSGALG00000002696 ENSGALG00000002696 198.99 1602.09
96. STMN1 ENSGALG00000001475 197.91 1593.40 stathmin 1 [Source:NCBI gene;Acc:396057]
97. GNB2L1 ENSGALG00000000122 197.64 1591.22 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
98. EIF3J ENSGALG00000008187 196.28 1580.27 eukaryotic translation initiation factor 3 subunit J [Source:NCBI gene;Acc:415573]
99. CRHOA CRHOA 192.21 1547.50
100. ITGB1BP3 ENSGALG00000030120 186.79 1503.87 integrin beta 1 binding protein 3 [Source:NCBI gene;Acc:415448]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA