Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_1, section s11.

Sample reads: 124,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5569.64 44833.26
2. MT-ATP6 MT-ATP6 2118.54 17053.36
3. TMSB4X ENSGALG00000026383 2037.36 16399.89 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
4. MT-CYB MT-CYB 1683.46 13551.14
5. RPLP1 ENSGALG00000030878 1536.06 12364.64 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
6. RPS10 ENSGALG00000002813 1039.63 8368.58 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. RPS3A ENSGALG00000010077 966.68 7781.37 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
8. RPS8 ENSGALG00000010124 900.84 7251.38 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
9. RPS12 ENSGALG00000013990 891.11 7173.06 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
10. RPS29 ENSGALG00000012229 843.98 6793.68 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
11. EEF1A EEF1A 815.92 6567.81
12. MT-CO1 MT-CO1 809.93 6519.60
13. RPLP0 ENSGALG00000023294 801.33 6450.37 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
14. MT-ND6 MT-ND6 749.70 6034.77
15. MT-ND5 MT-ND5 714.91 5754.72
16. RPL15 ENSGALG00000011290 693.21 5580.05 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
17. RPL35A ENSGALG00000007611, ENSGALG00000041230 690.59 5558.96 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
18. MT-ND4 MT-ND4 681.24 5483.70
19. gga-mir-3527 gga-mir-3527 665.53 5357.24
20. ENSGALG00000018384 ENSGALG00000018384 640.84 5158.49
21. RPL8 ENSGALG00000016232 622.51 5010.94 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
22. RPLP2 ENSGALG00000034811 621.76 5004.91 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
23. RPL27 ENSGALG00000002837 595.20 4791.11 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
24. RPL14 ENSGALG00000043379 592.58 4770.02 ribosomal protein L14
25. RPL38 ENSGALG00000001465 589.96 4748.93 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
26. RPL23 ENSGALG00000001634 571.25 4598.32 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
27. RPL26 RPL26 566.39 4559.20
28. GAPDH ENSGALG00000014442 558.91 4498.99 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
29. RAN ENSGALG00000002569 547.31 4405.62 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
30. RPS21 ENSGALG00000005338 546.56 4399.58 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
31. RPL18A 543.20 4372.53 ribosomal protein L18a
32. RPL36AL ENSGALG00000004952 534.97 4306.28 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
33. RPS15A ENSGALG00000006771 530.10 4267.08 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
34. RPS23 ENSGALG00000015617 529.35 4261.04 ribosomal protein S23
35. RPL4 ENSGALG00000007711 515.14 4146.66 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
36. HMGB2 ENSGALG00000010745 511.02 4113.50 high mobility group box 2 [Source:NCBI gene;Acc:396482]
37. RPL6 ENSGALG00000004818 510.65 4110.52 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
38. gga-mir-3533 ENSGALG00000027736 510.65 4110.52 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
39. RPL23A ENSGALG00000003966 499.05 4017.14 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
40. RPL13 ENSGALG00000006179 482.22 3881.67 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
41. RPL19 ENSGALG00000001658 479.97 3863.56 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
42. RPL7A ENSGALG00000003197 476.98 3839.49 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
43. RPL27A ENSGALG00000005948 466.88 3758.19 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
44. RPL21 ENSGALG00000027035 460.89 3709.97 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
45. RPL32 ENSGALG00000027142 456.40 3673.83 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
46. RPS4 RPS4 444.81 3580.53
47. ATP5G3 420.12 3381.79 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
48. RPS14 ENSGALG00000004588 418.62 3369.71 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
49. RPL35 ENSGALG00000035677 395.43 3183.05 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
50. RPL29 ENSGALG00000026978 383.08 3083.63 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
51. RPS15 ENSGALG00000015195 378.59 3047.49 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
52. ENSGALG00000018386 ENSGALG00000018386 369.99 2978.26
53. CIRBP ENSGALG00000030918 369.61 2975.20 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
54. HMGN5 ENSGALG00000007131 350.16 2818.64 high mobility group nucleosome binding domain 5, transcript variant X1
55. RPS7 ENSGALG00000016392 350.16 2818.64 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
56. PPIA ENSGALG00000028600 343.80 2767.45 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
57. SNRPD1 ENSGALG00000041334 334.07 2689.12 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
58. HSPA8 ENSGALG00000006512 330.71 2662.08 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
59. RPS25 ENSGALG00000007699 330.71 2662.08 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
60. MT-ND1 MT-ND1 323.97 2607.82
61. MIF ENSGALG00000006326 319.11 2568.70 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
62. TCEB3 ENSGALG00000034625 319.11 2568.70 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
63. RPS24 ENSGALG00000004871 318.36 2562.66 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
64. RPS13 ENSGALG00000006096 317.61 2556.63 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
65. RPSA 317.24 2553.65 ribosomal protein SA
66. RPS11 ENSGALG00000017299 310.88 2502.45 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
67. RPS16 ENSGALG00000026490 291.43 2345.89 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
68. RPL31 ENSGALG00000016775 289.56 2330.84 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
69. RPL37 ENSGALG00000014833 289.18 2327.78 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
70. NME2 ENSGALG00000002932 287.68 2315.70 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
71. RPS2 ENSGALG00000005490 286.56 2306.69 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
72. ENSGALG00000028649 ENSGALG00000028649 283.20 2279.64
73. RPL12 ENSGALG00000008806 281.70 2267.57 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
74. RPS20 ENSGALG00000014432 279.08 2246.48 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
75. RPL24 ENSGALG00000015339 277.21 2231.42 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
76. RPS28 ENSGALG00000024398 277.21 2231.42 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
77. ENO1 ENSGALG00000002377 267.86 2156.16 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
78. SHFM1 SHFM1 266.36 2144.09
79. HMGN2 HMGN2 264.49 2129.03
80. RPS27A ENSGALG00000036790 264.12 2126.05 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
81. MARCKSL1 ENSGALG00000032335 263.74 2123.00 MARCKS like 1 [Source:NCBI gene;Acc:770764]
82. ANP32B ENSGALG00000037483 262.99 2116.96 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
83. RPL5 ENSGALG00000005922 256.26 2062.79 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
84. TXN ENSGALG00000015704 250.65 2017.63 thioredoxin [Source:NCBI gene;Acc:396437]
85. MT-ND3 MT-ND3 249.53 2008.61
86. RPS6 ENSGALG00000015082 245.79 1978.51 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
87. RPL7 ENSGALG00000035252 241.30 1942.36 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
88. ENSGALG00000028992 ENSGALG00000028992 237.18 1909.20
89. RPL22 ENSGALG00000000719 235.31 1894.15 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
90. ACTG1_1 ENSGALG00000001381 233.07 1876.12 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
91. RPL10A ENSGALG00000002644 230.82 1858.00 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
92. MDK ENSGALG00000008367 229.70 1848.99 midkine [Source:NCBI gene;Acc:423196]
93. H2AFZ ENSGALG00000014023 228.58 1839.97 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
94. SET ENSGALG00000004701 228.58 1839.97 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
95. SEC61G ENSGALG00000037863 221.84 1785.72 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
96. H3-IX H3-IX 216.98 1746.60
97. NCL ENSGALG00000032930 215.48 1734.52 nucleolin [Source:NCBI gene;Acc:396201]
98. UBB ENSGALG00000004509 208.00 1674.31 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
99. STMN1 ENSGALG00000001475 207.63 1671.33 stathmin 1 [Source:NCBI gene;Acc:396057]
100. ENSGALG00000002696 ENSGALG00000002696 206.88 1665.30
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA