Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_1, section s1.

Sample reads: 124,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6564.89 52838.84
2. MT-ATP6 MT-ATP6 1803.85 14518.65
3. RPLP1 ENSGALG00000030878 1420.67 11434.55 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
4. EEF1A EEF1A 1274.28 10256.30
5. TMSB4X ENSGALG00000026383 1213.81 9769.59 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
6. MT-CYB MT-CYB 1165.44 9380.28
7. RPS10 ENSGALG00000002813 1151.43 9267.52 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
8. RPS3A ENSGALG00000010077 1006.95 8104.64 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
9. RPS8 ENSGALG00000010124 793.08 6383.26 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
10. MT-CO1 MT-CO1 737.07 5932.46
11. RPS12 ENSGALG00000013990 703.97 5666.04 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
12. MT-ND6 MT-ND6 701.43 5645.60
13. GAPDH ENSGALG00000014442 657.51 5292.10 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
14. RPS29 ENSGALG00000012229 653.05 5256.20 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
15. RPL8 ENSGALG00000016232 650.51 5235.76 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
16. RPL35A ENSGALG00000007611, ENSGALG00000041230 637.14 5128.15 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
17. MT-ND4 MT-ND4 632.05 5087.18
18. RPL6 ENSGALG00000004818 612.32 4928.38 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
19. RPL14 ENSGALG00000043379 596.40 4800.25 ribosomal protein L14
20. RPL23 ENSGALG00000001634 594.49 4784.87 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
21. RPL38 ENSGALG00000001465 576.67 4641.44 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
22. RPLP0 ENSGALG00000023294 555.67 4472.42 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
23. RPS21 ENSGALG00000005338 555.67 4472.42 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
24. RPLP2 ENSGALG00000034811 540.39 4349.44 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
25. RPL29 ENSGALG00000026978 539.75 4344.29 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
26. RPL7A ENSGALG00000003197 538.48 4334.06 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
27. RPL36AL ENSGALG00000004952 532.75 4287.95 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
28. RPS15A ENSGALG00000006771 529.57 4262.35 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
29. RPL26 RPL26 523.21 4211.16
30. ENSGALG00000018384 ENSGALG00000018384 516.84 4159.89
31. gga-mir-3533 ENSGALG00000027736 508.57 4093.33 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
32. MT-ND5 MT-ND5 507.29 4083.03
33. RPL18A 507.29 4083.03 ribosomal protein L18a
34. RPL27A ENSGALG00000005948 500.93 4031.84 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
35. gga-mir-3527 gga-mir-3527 500.29 4026.68
36. RPL27 ENSGALG00000002837 495.84 3990.87 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
37. RPL19 ENSGALG00000001658 495.20 3985.72 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
38. RPL15 ENSGALG00000011290 490.11 3944.75 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
39. RPL23A ENSGALG00000003966 479.92 3862.73 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
40. RPL13 ENSGALG00000006179 469.74 3780.80 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
41. RPL4 ENSGALG00000007711 444.92 3581.03 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
42. RPS6 ENSGALG00000015082 443.64 3570.73 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
43. RPS4 RPS4 428.37 3447.82
44. RPL21 ENSGALG00000027035 419.46 3376.11 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
45. RPS23 ENSGALG00000015617 415.00 3340.21 ribosomal protein S23
46. RPL35 ENSGALG00000035677 413.73 3329.99 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
47. RPS15 ENSGALG00000015195 410.54 3304.31 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
48. RAN ENSGALG00000002569 402.91 3242.90 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
49. HMGB2 ENSGALG00000010745 401.00 3227.53 high mobility group box 2 [Source:NCBI gene;Acc:396482]
50. RPS14 ENSGALG00000004588 400.36 3222.38 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
51. RPL32 ENSGALG00000027142 396.54 3191.63 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
52. MT-ND3 MT-ND3 385.08 3099.39
53. RPS7 ENSGALG00000016392 385.08 3099.39 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
54. ENO1 ENSGALG00000002377 383.81 3089.17 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
55. RPSA 378.08 3043.05 ribosomal protein SA
56. MARCKSL1 ENSGALG00000032335 372.99 3002.09 MARCKS like 1 [Source:NCBI gene;Acc:770764]
57. ANP32B ENSGALG00000037483 362.81 2920.15 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
58. RPS16 ENSGALG00000026490 357.71 2879.10 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
59. RPS25 ENSGALG00000007699 354.53 2853.51 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
60. ATP5G3 347.53 2797.17 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
61. HMGN5 ENSGALG00000007131 343.08 2761.35 high mobility group nucleosome binding domain 5, transcript variant X1
62. SNRPD1 ENSGALG00000041334 342.44 2756.20 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
63. CIRBP ENSGALG00000030918 341.17 2745.98 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
64. RPS13 ENSGALG00000006096 332.25 2674.18 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
65. RPS11 ENSGALG00000017299 327.16 2633.21 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
66. RPL37 ENSGALG00000014833 317.61 2556.35 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
67. RPL24 ENSGALG00000015339 312.52 2515.38 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
68. HSPA8 ENSGALG00000006512 307.43 2474.41 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
69. RPS20 ENSGALG00000014432 306.79 2469.26 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
70. RPS24 ENSGALG00000004871 306.79 2469.26 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
71. MT-ND1 MT-ND1 306.16 2464.19
72. RPL31 ENSGALG00000016775 306.16 2464.19 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
73. PPIA ENSGALG00000028600 297.25 2392.48 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
74. MIF ENSGALG00000006326 295.34 2377.10 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
75. RPS2 ENSGALG00000005490 294.70 2371.95 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
76. NME2 ENSGALG00000002932 288.97 2325.83 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
77. STMN1 ENSGALG00000001475 282.61 2274.64 stathmin 1 [Source:NCBI gene;Acc:396057]
78. ENSGALG00000028649 ENSGALG00000028649 281.33 2264.34
79. TXN ENSGALG00000015704 280.70 2259.27 thioredoxin [Source:NCBI gene;Acc:396437]
80. RPL10A ENSGALG00000002644 279.42 2248.97 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
81. ENSGALG00000002696 ENSGALG00000002696 275.61 2218.30
82. RPL5 ENSGALG00000005922 268.60 2161.88 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
83. TCEB3 ENSGALG00000034625 264.79 2131.22 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
84. SNRPG ENSGALG00000028409 257.78 2074.79 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
85. ENSGALG00000028992 ENSGALG00000028992 250.15 2013.38
86. SHFM1 SHFM1 246.96 1987.71
87. HMGN2 HMGN2 241.23 1941.59
88. H2AFZ ENSGALG00000014023 234.23 1885.25 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
89. LDHB ENSGALG00000035836 234.23 1885.25 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
90. RPL9 ENSGALG00000000150 228.50 1839.13 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
91. RPL7 ENSGALG00000035252 226.60 1823.84 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
92. RPS27A ENSGALG00000036790 222.78 1793.09 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
93. RPL12 ENSGALG00000008806 222.14 1787.94 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
94. RPS3 ENSGALG00000017330 220.87 1777.72 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
95. RPL22 ENSGALG00000000719 218.32 1757.19 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
96. SET ENSGALG00000004701 211.96 1706.00 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
97. ENSGALG00000018386 ENSGALG00000018386 211.32 1700.85
98. RPL36 ENSGALG00000000474 211.32 1700.85 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
99. HSP90AB1 ENSGALG00000010175 208.14 1675.26 heat shock protein 90 alpha family class B member 1 [Source:NCBI gene;Acc:396188]
100. UBB ENSGALG00000004509 205.59 1654.73 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA