Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s95.

Sample reads: 113,616. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4568.10 40209.61
2. EEF1A EEF1A 1421.64 12513.65
3. MT-ATP6 MT-ATP6 1089.46 9589.71
4. CIRBP ENSGALG00000030918 1067.71 9398.26 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
5. gga-mir-3533 ENSGALG00000027736 1027.51 9044.41 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. RPLP0 ENSGALG00000023294 933.26 8214.80 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
7. RPL35A ENSGALG00000007611, ENSGALG00000041230 874.60 7698.46 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
8. MT-ND5 MT-ND5 858.13 7553.48
9. RPS10 ENSGALG00000002813 800.13 7042.95 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. RPL23A ENSGALG00000003966 773.10 6805.03 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
11. RPLP1 ENSGALG00000030878 742.79 6538.23 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
12. RPL15 ENSGALG00000011290 734.88 6468.61 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
13. RPL4 ENSGALG00000007711 701.92 6178.48 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
14. GAPDH ENSGALG00000014442 682.81 6010.27 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
15. RPS23 ENSGALG00000015617 649.20 5714.43 ribosomal protein S23
16. RPSA 571.42 5029.79 ribosomal protein SA
17. SNRPD1 ENSGALG00000041334 570.11 5018.26 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
18. MDK ENSGALG00000008367 562.86 4954.44 midkine [Source:NCBI gene;Acc:423196]
19. RPL27A ENSGALG00000005948 543.08 4780.33 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
20. MT-CYB MT-CYB 518.70 4565.73
21. MT-ND4 MT-ND4 510.79 4496.11
22. RPL13 ENSGALG00000006179 506.18 4455.53 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
23. RPL8 ENSGALG00000016232 504.20 4438.10 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
24. RPS11 ENSGALG00000017299 500.24 4403.24 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
25. PPIA ENSGALG00000028600 498.27 4385.90 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
26. RPS21 ENSGALG00000005338 484.43 4264.08 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
27. RPL19 ENSGALG00000001658 478.49 4211.79 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
28. RPS15 ENSGALG00000015195 478.49 4211.79 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
29. GNB2L1 ENSGALG00000000122 477.83 4205.98 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
30. RPS8 ENSGALG00000010124 446.20 3927.57 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
31. RPS29 ENSGALG00000012229 443.56 3904.33 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
32. gga-mir-3527 gga-mir-3527 441.59 3886.99
33. RPL7A ENSGALG00000003197 437.63 3852.13 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
34. RPL29 ENSGALG00000026978 425.11 3741.93 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
35. RPS15A ENSGALG00000006771 423.13 3724.50 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
36. RPS3A ENSGALG00000010077 417.86 3678.11 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
37. RPL12 ENSGALG00000008806 416.54 3666.49 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
38. NME2 ENSGALG00000002932 411.93 3625.92 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
39. RPL35 ENSGALG00000035677 409.29 3602.68 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
40. RPL27 ENSGALG00000002837 407.97 3591.06 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
41. RPL37 ENSGALG00000014833 407.97 3591.06 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
42. RPL38 ENSGALG00000001465 407.97 3591.06 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
43. RPS2 ENSGALG00000005490 404.68 3562.10 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
44. RPS6 ENSGALG00000015082 403.36 3550.48 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
45. RPS12 ENSGALG00000013990 401.38 3533.05 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
46. RPL26 RPL26 397.43 3498.28
47. RPS4 RPS4 383.59 3376.46
48. RPL32 ENSGALG00000027142 380.95 3353.22 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
49. TMSB4X ENSGALG00000026383 371.72 3271.98 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
50. RPS16 ENSGALG00000026490 371.06 3266.17 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
51. RPS27A ENSGALG00000036790 361.84 3185.01 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
52. TXN ENSGALG00000015704 358.54 3155.96 thioredoxin [Source:NCBI gene;Acc:396437]
53. MT-CO1 MT-CO1 352.61 3103.77
54. RPL36 ENSGALG00000000474 342.72 3016.71 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
55. RPS28 ENSGALG00000024398 338.77 2981.94 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
56. RPL24 ENSGALG00000015339 328.22 2889.08 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
57. RPL18A 326.25 2871.74 ribosomal protein L18a
58. PHB2 ENSGALG00000014567 318.34 2802.11 prohibitin 2 [Source:NCBI gene;Acc:771124]
59. RPL14 ENSGALG00000043379 309.77 2726.68 ribosomal protein L14
60. HMGN5 ENSGALG00000007131 307.79 2709.25 high mobility group nucleosome binding domain 5, transcript variant X1
61. RPS7 ENSGALG00000016392 295.27 2599.04 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
62. ENSGALG00000028649 ENSGALG00000028649 291.31 2564.19
63. RPL21 ENSGALG00000027035 283.41 2494.65 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
64. RPS14 ENSGALG00000004588 283.41 2494.65 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
65. RPL23 ENSGALG00000001634 277.47 2442.36 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
66. RPL6 ENSGALG00000004818 271.54 2390.17 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
67. STMN1 ENSGALG00000001475 269.56 2372.74 stathmin 1 [Source:NCBI gene;Acc:396057]
68. EIF5A2 ENSGALG00000009309 268.25 2361.21 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
69. MT-ND3 MT-ND3 260.34 2291.58
70. PRDX1 ENSGALG00000010243 259.68 2285.77 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
71. RPS20 ENSGALG00000014432 258.36 2274.15 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
72. UBB ENSGALG00000004509 258.36 2274.15 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
73. ALDOC ENSGALG00000026077 257.04 2262.53 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
74. RPL5 ENSGALG00000005922 253.09 2227.76 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
75. EEF1D 251.11 2210.34 eukaryotic translation elongation factor 1 delta, transcript variant X13
76. RPL37A ENSGALG00000011472 251.11 2210.34 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
77. AKAP12 ENSGALG00000036240 243.86 2146.52 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
78. ANP32B ENSGALG00000037483 243.86 2146.52 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
79. ENO1 ENSGALG00000002377 243.20 2140.71 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
80. TCEB3 ENSGALG00000034625 242.54 2134.90 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
81. RPL36AL ENSGALG00000004952 241.88 2129.09 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
82. H3-IX H3-IX 239.91 2111.75
83. ATP5G3 228.04 2007.27 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
84. RPS13 ENSGALG00000006096 228.04 2007.27 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
85. CRHOA CRHOA 226.72 1995.65
86. RPL7 ENSGALG00000035252 226.07 1989.93 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
87. LDHB ENSGALG00000035836 223.43 1966.69 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
88. SLC25A6_1 ENSGALG00000016691 222.77 1960.88 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
89. MT-ND1 MT-ND1 222.11 1955.07
90. EIF4G2 ENSGALG00000005587 214.86 1891.25 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
91. HNRNPDL ENSGALG00000023199 213.54 1879.63 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
92. RPS17 ENSGALG00000002157 212.88 1873.83 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
93. RPLP2 ENSGALG00000034811 209.59 1844.87 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
94. HMGN2 HMGN2 208.93 1839.06
95. SET ENSGALG00000004701 208.93 1839.06 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
96. ENSGALG00000002696 ENSGALG00000002696 201.68 1775.24
97. ENSGALG00000028992 ENSGALG00000028992 201.68 1775.24
98. RPL31 ENSGALG00000016775 199.70 1757.81 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
99. RPS25 ENSGALG00000007699 197.72 1740.38 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
100. RAN ENSGALG00000002569 190.47 1676.57 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA