Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s91.

Sample reads: 113,438. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4746.38 41841.99
2. MT-ATP6 MT-ATP6 1282.35 11304.63
3. EEF1A EEF1A 1199.12 10570.91
4. gga-mir-3533 ENSGALG00000027736 1022.48 9013.73 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
5. RPL35A ENSGALG00000007611, ENSGALG00000041230 995.30 8774.12 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
6. MT-ND5 MT-ND5 978.32 8624.44
7. CIRBP ENSGALG00000030918 933.31 8227.65 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
8. MDK ENSGALG00000008367 890.00 7845.85 midkine [Source:NCBI gene;Acc:423196]
9. RPLP1 ENSGALG00000030878 757.52 6677.96 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
10. RPS10 ENSGALG00000002813 749.03 6603.12 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
11. RPLP0 ENSGALG00000023294 726.10 6400.98 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
12. RPL23A ENSGALG00000003966 696.37 6138.89 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
13. RPL15 ENSGALG00000011290 662.40 5839.43 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
14. GAPDH ENSGALG00000014442 652.21 5749.59 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
15. RPL4 ENSGALG00000007711 590.22 5203.12 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
16. PPIA ENSGALG00000028600 549.46 4843.80 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
17. MT-ND4 MT-ND4 543.51 4791.34
18. SNRPD1 ENSGALG00000041334 515.49 4544.33 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
19. RPL19 ENSGALG00000001658 512.94 4521.85 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
20. MT-CYB MT-CYB 509.54 4491.88
21. RPL27A ENSGALG00000005948 506.99 4469.40 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
22. RPSA 496.80 4379.57 ribosomal protein SA
23. RPS23 ENSGALG00000015617 495.10 4364.58 ribosomal protein S23
24. RPS8 ENSGALG00000010124 482.37 4252.36 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
25. gga-mir-3527 gga-mir-3527 472.18 4162.53
26. RPS21 ENSGALG00000005338 453.49 3997.77 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
27. RPS11 ENSGALG00000017299 450.94 3975.29 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
28. RPL7A ENSGALG00000003197 443.30 3907.94 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
29. RPL29 ENSGALG00000026978 441.60 3892.95 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
30. RPL8 ENSGALG00000016232 441.60 3892.95 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
31. HMGN5 ENSGALG00000007131 440.75 3885.46 high mobility group nucleosome binding domain 5, transcript variant X1
32. MT-CO1 MT-CO1 432.26 3810.61
33. RPS29 ENSGALG00000012229 427.17 3765.74 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
34. RPL27 ENSGALG00000002837 411.88 3630.95 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
35. RPL26 RPL26 408.48 3600.98
36. RPS2 ENSGALG00000005490 403.39 3556.11 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
37. RPS6 ENSGALG00000015082 395.74 3488.67 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
38. RPL12 ENSGALG00000008806 393.20 3466.28 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
39. RPL13 ENSGALG00000006179 393.20 3466.28 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
40. RPS15A ENSGALG00000006771 386.40 3406.33 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
41. RPS3A ENSGALG00000010077 385.55 3398.84 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
42. RPL38 ENSGALG00000001465 383.85 3383.85 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
43. RPS4 RPS4 381.31 3361.46
44. GNB2L1 ENSGALG00000000122 378.76 3338.98 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
45. RPL35 ENSGALG00000035677 375.36 3309.01 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
46. RPS12 ENSGALG00000013990 373.66 3294.02 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
47. RPL37 ENSGALG00000014833 370.27 3264.14 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
48. TXN ENSGALG00000015704 358.38 3159.32 thioredoxin [Source:NCBI gene;Acc:396437]
49. RPL32 ENSGALG00000027142 356.68 3144.33 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
50. RPS15 ENSGALG00000015195 349.04 3076.98 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
51. NME2 ENSGALG00000002932 344.79 3039.52 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
52. RPS28 ENSGALG00000024398 343.94 3032.02 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
53. RPL21 ENSGALG00000027035 335.45 2957.18 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
54. ENSGALG00000028649 ENSGALG00000028649 331.20 2919.71
55. RPS16 ENSGALG00000026490 329.50 2904.73 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
56. RPL36 ENSGALG00000000474 323.56 2852.36 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
57. RPS27A ENSGALG00000036790 311.67 2747.54 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
58. PHB2 ENSGALG00000014567 309.97 2732.56 prohibitin 2 [Source:NCBI gene;Acc:771124]
59. RPL23 ENSGALG00000001634 298.08 2627.74 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
60. RPS14 ENSGALG00000004588 296.38 2612.75 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
61. ANP32B ENSGALG00000037483 295.53 2605.26 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
62. RPL14 ENSGALG00000043379 295.53 2605.26 ribosomal protein L14
63. RPL24 ENSGALG00000015339 293.84 2590.36 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
64. RPS20 ENSGALG00000014432 279.40 2463.07 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
65. RPS7 ENSGALG00000016392 277.70 2448.08 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
66. RPL18A 275.15 2425.60 ribosomal protein L18a
67. TMSB4X ENSGALG00000026383 275.15 2425.60 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
68. SET ENSGALG00000004701 270.91 2388.22 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
69. HBG1 HBG1 265.81 2343.26
70. STMN1 ENSGALG00000001475 263.26 2320.78 stathmin 1 [Source:NCBI gene;Acc:396057]
71. UBB ENSGALG00000004509 257.32 2268.42 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
72. MT-ND3 MT-ND3 256.47 2260.93
73. CRHOA CRHOA 254.77 2245.94
74. RPL6 ENSGALG00000004818 253.92 2238.45 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
75. AKAP12 ENSGALG00000036240 249.68 2201.07 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
76. EIF5A2 ENSGALG00000009309 248.83 2193.58 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
77. MT-ND1 MT-ND1 247.13 2178.59
78. SLC25A6_1 ENSGALG00000016691 237.79 2096.25 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
79. RPL36AL ENSGALG00000004952 230.99 2036.31 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
80. ATP5G3 230.14 2028.81 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
81. ENO1 ENSGALG00000002377 228.44 2013.83 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
82. RPL5 ENSGALG00000005922 227.60 2006.42 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
83. TCEB3 ENSGALG00000034625 226.75 1998.93 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
84. RPLP2 ENSGALG00000034811 225.05 1983.94 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
85. RPS25 ENSGALG00000007699 224.20 1976.45 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
86. ALDOC ENSGALG00000026077 218.25 1924.00 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
87. H3-IX H3-IX 218.25 1924.00
88. ENSGALG00000002696 ENSGALG00000002696 214.86 1894.11
89. ENSGALG00000018384 ENSGALG00000018384 214.86 1894.11
90. HBZ ENSGALG00000023740 214.86 1894.11 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
91. HMGN2 HMGN2 214.86 1894.11
92. PRDX1 ENSGALG00000010243 212.31 1871.63 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
93. RAN ENSGALG00000002569 208.91 1841.66 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
94. RPS13 ENSGALG00000006096 207.21 1826.67 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
95. RPL10A ENSGALG00000002644 204.67 1804.28 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
96. EEF1D 201.27 1774.31 eukaryotic translation elongation factor 1 delta, transcript variant X13
97. RPL7 ENSGALG00000035252 199.57 1759.32 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
98. ENSGALG00000028992 ENSGALG00000028992 195.32 1721.85
99. HBE 194.48 1714.45 hemoglobin subunit epsilon
100. HNRNPDL ENSGALG00000023199 189.38 1669.49 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA