Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s9.

Sample reads: 113,745. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3607.59 31718.52
2. CIRBP ENSGALG00000030918 1300.74 11436.32 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
3. EEF1A EEF1A 1241.62 10916.52
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 1002.16 8811.15 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. MT-ATP6 MT-ATP6 870.12 7650.24
6. RPS10 ENSGALG00000002813 861.25 7572.25 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. gga-mir-3533 ENSGALG00000027736 832.67 7320.97 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. RPLP0 ENSGALG00000023294 801.14 7043.75 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
9. RPL23A ENSGALG00000003966 793.26 6974.47 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
10. RPL15 ENSGALG00000011290 759.75 6679.85 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
11. RPLP1 ENSGALG00000030878 749.90 6593.24 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
12. RPS23 ENSGALG00000015617 732.16 6437.27 ribosomal protein S23
13. SNRPD1 ENSGALG00000041334 692.74 6090.68 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
14. RPL4 ENSGALG00000007711 666.14 5856.81 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
15. RPS15 ENSGALG00000015195 650.37 5718.16 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
16. GAPDH ENSGALG00000014442 608.98 5354.25 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
17. MT-ND5 MT-ND5 593.22 5215.69
18. RPL13 ENSGALG00000006179 568.58 4999.05 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
19. RPL35 ENSGALG00000035677 539.02 4739.15 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
20. RPS21 ENSGALG00000005338 538.03 4730.45 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
21. RPL29 ENSGALG00000026978 510.44 4487.87 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
22. PPIA ENSGALG00000028600 496.65 4366.63 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
23. RPSA 473.98 4167.31 ribosomal protein SA
24. RPL19 ENSGALG00000001658 471.03 4141.37 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
25. RPS2 ENSGALG00000005490 467.08 4106.64 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
26. RPL27A ENSGALG00000005948 457.23 4020.04 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
27. RPS3A ENSGALG00000010077 457.23 4020.04 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
28. RPS29 ENSGALG00000012229 449.35 3950.76 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
29. RPS15A ENSGALG00000006771 448.36 3942.05 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
30. MT-ND4 MT-ND4 442.45 3890.09
31. MDK ENSGALG00000008367 438.51 3855.45 midkine [Source:NCBI gene;Acc:423196]
32. RPL27 ENSGALG00000002837 429.64 3777.46 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
33. gga-mir-3527 gga-mir-3527 423.73 3725.50
34. RPL7A ENSGALG00000003197 421.76 3708.18 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
35. RPS12 ENSGALG00000013990 420.77 3699.48 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
36. RPS27A ENSGALG00000036790 414.86 3647.52 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
37. RPL12 ENSGALG00000008806 413.87 3638.81 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
38. RPL38 ENSGALG00000001465 405.00 3560.83 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
39. RPL8 ENSGALG00000016232 397.12 3491.54 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
40. RPL36 ENSGALG00000000474 394.16 3465.52 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
41. RPS4 RPS4 387.27 3404.94
42. MT-CYB MT-CYB 386.28 3396.24
43. RPL26 RPL26 386.28 3396.24
44. RPS8 ENSGALG00000010124 374.46 3292.31 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
45. RPL6 ENSGALG00000004818 372.49 3274.99 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
46. EIF5A2 ENSGALG00000009309 371.50 3266.29 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
47. RPL37A ENSGALG00000011472 364.60 3205.62 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
48. RPS11 ENSGALG00000017299 364.60 3205.62 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
49. RPS6 ENSGALG00000015082 352.78 3101.70 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
50. RPS28 ENSGALG00000024398 351.79 3092.99 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
51. RPL24 ENSGALG00000015339 343.91 3023.71 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
52. ANP32B ENSGALG00000037483 338.98 2980.37 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
53. GNB2L1 ENSGALG00000000122 337.01 2963.05 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
54. RPL32 ENSGALG00000027142 337.01 2963.05 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
55. TXN ENSGALG00000015704 335.04 2945.73 thioredoxin [Source:NCBI gene;Acc:396437]
56. RPS16 ENSGALG00000026490 327.16 2876.44 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
57. RPL21 ENSGALG00000027035 318.29 2798.46 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
58. NME2 ENSGALG00000002932 317.30 2789.75 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
59. ATP5G3 316.32 2781.14 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
60. RPL23 ENSGALG00000001634 313.36 2755.11 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
61. MT-CO1 MT-CO1 307.45 2703.15
62. RPL37 ENSGALG00000014833 303.51 2668.51 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
63. RPS14 ENSGALG00000004588 299.56 2633.78 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
64. RPL18A 291.68 2564.50 ribosomal protein L18a
65. PHB2 ENSGALG00000014567 285.77 2512.54 prohibitin 2 [Source:NCBI gene;Acc:771124]
66. TCEB3 ENSGALG00000034625 282.81 2486.51 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
67. ENSGALG00000028649 ENSGALG00000028649 280.84 2469.19
68. LDHB ENSGALG00000035836 276.90 2434.55 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
69. TMSB4X ENSGALG00000026383 272.96 2399.91 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
70. RPS7 ENSGALG00000016392 254.24 2235.32 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
71. RPS20 ENSGALG00000014432 253.25 2226.62 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
72. MT-ND3 MT-ND3 252.27 2218.00
73. RPS13 ENSGALG00000006096 250.29 2200.59 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
74. HMGN2 HMGN2 248.32 2183.27
75. RPL14 ENSGALG00000043379 248.32 2183.27 ribosomal protein L14
76. PRDX1 ENSGALG00000010243 246.35 2165.95 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
77. HMGN5 ENSGALG00000007131 244.38 2148.63 high mobility group nucleosome binding domain 5, transcript variant X1
78. RPL36AL ENSGALG00000004952 244.38 2148.63 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
79. HBZ ENSGALG00000023740 243.40 2140.01 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
80. HBG1 HBG1 238.47 2096.67
81. ENO1 ENSGALG00000002377 237.48 2087.96 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
82. RPS17 ENSGALG00000002157 236.50 2079.35 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
83. ENSGALG00000002696 ENSGALG00000002696 234.53 2062.03
84. HNRNPDL ENSGALG00000023199 232.56 2044.71 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
85. HSPA8 ENSGALG00000006512 231.57 2036.00 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
86. H3-IX H3-IX 230.59 2027.38
87. RPL7 ENSGALG00000035252 230.59 2027.38 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
88. EIF4G2 ENSGALG00000005587 222.70 1958.01 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
89. RAN ENSGALG00000002569 222.70 1958.01 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
90. MT-ND1 MT-ND1 220.73 1940.69
91. UBB ENSGALG00000004509 218.76 1923.37 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
92. SET ENSGALG00000004701 216.79 1906.05 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
93. CRHOA CRHOA 214.82 1888.73
94. ALDOC ENSGALG00000026077 213.83 1880.03 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
95. RPL31 ENSGALG00000016775 212.85 1871.41 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
96. RPL5 ENSGALG00000005922 211.86 1862.71 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
97. SLC25A6_1 ENSGALG00000016691 211.86 1862.71 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
98. GPC4 ENSGALG00000006080 207.92 1828.07 glypican 4 [Source:HGNC Symbol;Acc:HGNC:4452]
99. SSR1 ENSGALG00000012798 204.97 1802.13 signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
100. STMN1 ENSGALG00000001475 202.01 1776.10 stathmin 1 [Source:NCBI gene;Acc:396057]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA