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Experiment Chicken_E3_embryo, section s89.

Sample reads: 113,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3423.23 30230.28
2. EEF1A EEF1A 1302.69 11503.96
3. gga-mir-3533 ENSGALG00000027736 1105.58 9763.29 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
4. MT-ATP6 MT-ATP6 1060.27 9363.16
5. MDK ENSGALG00000008367 1005.90 8883.03 midkine [Source:NCBI gene;Acc:423196]
6. CIRBP ENSGALG00000030918 1000.24 8833.04 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
7. MT-ND5 MT-ND5 893.76 7892.73
8. RPLP0 ENSGALG00000023294 886.96 7832.68 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
9. GAPDH ENSGALG00000014442 841.65 7432.55 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. RPL23A ENSGALG00000003966 818.99 7232.44 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
11. RPLP1 ENSGALG00000030878 758.96 6702.32 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
12. RPS10 ENSGALG00000002813 741.96 6552.19 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
13. RPL15 ENSGALG00000011290 731.77 6462.20 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
14. RPL35A ENSGALG00000007611, ENSGALG00000041230 651.34 5751.93 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
15. RPL4 ENSGALG00000007711 566.38 5001.66 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
16. RPS21 ENSGALG00000005338 562.99 4971.72 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
17. RPSA 562.99 4971.72 ribosomal protein SA
18. PPIA ENSGALG00000028600 532.40 4701.58 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
19. MT-ND4 MT-ND4 525.61 4641.62
20. RPL19 ENSGALG00000001658 501.82 4431.53 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
21. RPS6 ENSGALG00000015082 496.15 4381.46 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
22. SNRPD1 ENSGALG00000041334 496.15 4381.46 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
23. RPL27A ENSGALG00000005948 489.36 4321.50 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
24. RPS23 ENSGALG00000015617 487.09 4301.45 ribosomal protein S23
25. RPL8 ENSGALG00000016232 458.77 4051.36 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
26. RPL7A ENSGALG00000003197 456.51 4031.40 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
27. RPS11 ENSGALG00000017299 453.11 4001.38 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
28. RPL38 ENSGALG00000001465 450.84 3981.33 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
29. RPS15A ENSGALG00000006771 440.65 3891.35 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
30. MT-CYB MT-CYB 439.51 3881.28
31. RPL26 RPL26 430.45 3801.27
32. RPL13 ENSGALG00000006179 428.19 3781.31 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
33. GNB2L1 ENSGALG00000000122 425.92 3761.27 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
34. RPS8 ENSGALG00000010124 419.12 3701.22 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
35. RPL37 ENSGALG00000014833 417.99 3691.24 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
36. RPS29 ENSGALG00000012229 416.86 3681.26 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
37. HMGN5 ENSGALG00000007131 412.33 3641.25 high mobility group nucleosome binding domain 5, transcript variant X1
38. RPS2 ENSGALG00000005490 411.20 3631.28 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
39. RPS12 ENSGALG00000013990 399.87 3531.22 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
40. RPS4 RPS4 397.60 3511.18
41. RPL29 ENSGALG00000026978 389.67 3441.15 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
42. PHB2 ENSGALG00000014567 386.27 3411.12 prohibitin 2 [Source:NCBI gene;Acc:771124]
43. NME2 ENSGALG00000002932 378.35 3341.18 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
44. RPL27 ENSGALG00000002837 377.21 3331.11 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
45. RPS3A ENSGALG00000010077 372.68 3291.11 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
46. RPL36 ENSGALG00000000474 371.55 3281.13 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
47. RPL12 ENSGALG00000008806 363.62 3211.10 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
48. RPL21 ENSGALG00000027035 350.03 3091.09 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
49. RPL35 ENSGALG00000035677 348.89 3081.02 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
50. RPS15 ENSGALG00000015195 345.49 3051.00 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
51. RPL32 ENSGALG00000027142 343.23 3031.04 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
52. RPS16 ENSGALG00000026490 335.30 2961.01 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
53. TXN ENSGALG00000015704 335.30 2961.01 thioredoxin [Source:NCBI gene;Acc:396437]
54. gga-mir-3527 gga-mir-3527 335.30 2961.01
55. RPL14 ENSGALG00000043379 326.24 2881.00 ribosomal protein L14
56. ALDOC ENSGALG00000026077 318.31 2810.97 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
57. ENSGALG00000028649 ENSGALG00000028649 318.31 2810.97
58. RPS14 ENSGALG00000004588 318.31 2810.97 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
59. MT-CO1 MT-CO1 312.64 2760.90
60. RPS27A ENSGALG00000036790 310.38 2740.94 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
61. ANP32B ENSGALG00000037483 296.79 2620.93 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
62. RPL18A 295.65 2610.86 ribosomal protein L18a
63. RPS7 ENSGALG00000016392 289.99 2560.88 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
64. ENSGALG00000018384 ENSGALG00000018384 283.19 2500.83
65. RPS28 ENSGALG00000024398 282.06 2490.85 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
66. STMN1 ENSGALG00000001475 280.93 2480.87 stathmin 1 [Source:NCBI gene;Acc:396057]
67. RPL7 ENSGALG00000035252 277.53 2450.85 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
68. ENO1 ENSGALG00000002377 274.13 2420.82 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
69. RPL23 ENSGALG00000001634 270.73 2390.80 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
70. MT-ND3 MT-ND3 256.01 2260.80
71. RPL24 ENSGALG00000015339 253.74 2240.76 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
72. RPS20 ENSGALG00000014432 252.61 2230.78 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
73. TCEB3 ENSGALG00000034625 252.61 2230.78 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
74. RPL6 ENSGALG00000004818 248.08 2190.78 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
75. RPLP2 ENSGALG00000034811 245.81 2170.73 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
76. EIF5A2 ENSGALG00000009309 242.41 2140.70 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
77. CRHOA CRHOA 239.01 2110.68
78. RPS25 ENSGALG00000007699 232.22 2050.72 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
79. RPL37A ENSGALG00000011472 229.95 2030.67 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
80. TMSB4X ENSGALG00000026383 227.69 2010.71 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
81. H3-IX H3-IX 225.42 1990.67
82. RPL5 ENSGALG00000005922 225.42 1990.67 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
83. SET ENSGALG00000004701 224.29 1980.69 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
84. ATP5G3 223.16 1970.71 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
85. HBG1 HBG1 222.02 1960.64
86. RPS17 ENSGALG00000002157 219.76 1940.68 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
87. EEF1D 218.62 1930.62 eukaryotic translation elongation factor 1 delta, transcript variant X13
88. ENSGALG00000002696 ENSGALG00000002696 218.62 1930.62
89. RPS13 ENSGALG00000006096 209.56 1850.61 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
90. UBB ENSGALG00000004509 209.56 1850.61 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
91. RPL36AL ENSGALG00000004952 208.43 1840.63 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
92. PRDX1 ENSGALG00000010243 205.03 1810.60 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
93. HMGN2 HMGN2 197.10 1740.58
94. HNRNPDL ENSGALG00000023199 197.10 1740.58 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
95. AKAP12 ENSGALG00000036240 193.70 1710.55 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
96. SLC25A6_1 ENSGALG00000016691 193.70 1710.55 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
97. RPL10A ENSGALG00000002644 190.31 1680.61 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
98. ENSGALG00000028992 ENSGALG00000028992 188.04 1660.57
99. SEC61G ENSGALG00000037863 185.77 1640.52 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
100. RPL3 ENSGALG00000012172 184.64 1630.54 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA