Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s80.

Sample reads: 113,358. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4456.94 39319.31
2. MT-ATP6 MT-ATP6 1254.57 11067.87
3. MT-ND5 MT-ND5 1064.70 9392.83
4. EEF1A EEF1A 1038.76 9163.98
5. CIRBP ENSGALG00000030918 994.05 8769.55 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
6. RPL35A ENSGALG00000007611, ENSGALG00000041230 925.06 8160.92 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
7. gga-mir-3533 ENSGALG00000027736 879.25 7756.78 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. GAPDH ENSGALG00000014442 827.36 7299.00 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
9. RPLP1 ENSGALG00000030878 737.95 6510.23 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
10. RPL23A ENSGALG00000003966 736.29 6495.58 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
11. MDK ENSGALG00000008367 722.49 6373.84 midkine [Source:NCBI gene;Acc:423196]
12. RPS10 ENSGALG00000002813 702.07 6193.69 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
13. RPL15 ENSGALG00000011290 683.86 6033.04 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
14. RPL4 ENSGALG00000007711 681.65 6013.54 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
15. RPLP0 ENSGALG00000023294 667.30 5886.95 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
16. HBG1 HBG1 644.67 5687.31
17. RPS23 ENSGALG00000015617 547.53 4830.33 ribosomal protein S23
18. SNRPD1 ENSGALG00000041334 530.42 4679.39 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
19. RPL27A ENSGALG00000005948 512.76 4523.59 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
20. MT-CYB MT-CYB 493.44 4353.15
21. RPS8 ENSGALG00000010124 476.33 4202.20 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
22. HBZ ENSGALG00000023740 471.36 4158.36 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
23. MT-ND4 MT-ND4 468.60 4134.01
24. RPL19 ENSGALG00000001658 461.42 4070.67 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
25. RPL13 ENSGALG00000006179 458.11 4041.47 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
26. RPSA 453.70 4002.56 ribosomal protein SA
27. RPS15A ENSGALG00000006771 441.00 3890.52 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
28. PPIA ENSGALG00000028600 438.24 3866.17 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
29. RPL26 RPL26 435.48 3841.82
30. RPS21 ENSGALG00000005338 433.83 3827.27 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
31. RPS2 ENSGALG00000005490 429.41 3788.27 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
32. RPS12 ENSGALG00000013990 426.65 3763.92 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
33. RPL7A ENSGALG00000003197 425.00 3749.37 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
34. RPL32 ENSGALG00000027142 417.82 3686.03 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
35. RPL8 ENSGALG00000016232 415.06 3661.68 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
36. HBE 402.37 3549.72 hemoglobin subunit epsilon
37. RPL38 ENSGALG00000001465 398.50 3515.58 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
38. RPS6 ENSGALG00000015082 398.50 3515.58 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
39. gga-mir-3527 gga-mir-3527 397.40 3505.88
40. RPS29 ENSGALG00000012229 396.85 3501.03 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
41. RPS3A ENSGALG00000010077 396.30 3496.17 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
42. RPL12 ENSGALG00000008806 377.53 3330.59 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
43. RPL27 ENSGALG00000002837 374.22 3301.38 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
44. RPL29 ENSGALG00000026978 372.56 3286.74 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
45. RPS16 ENSGALG00000026490 369.25 3257.54 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
46. RPL35 ENSGALG00000035677 368.15 3247.83 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
47. NME2 ENSGALG00000002932 367.59 3242.89 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
48. RPS11 ENSGALG00000017299 365.94 3228.34 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
49. RPL37 ENSGALG00000014833 361.52 3189.34 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
50. MT-CO1 MT-CO1 357.66 3155.29
51. ENSGALG00000028649 ENSGALG00000028649 351.04 3096.89
52. RPS4 RPS4 346.62 3057.90
53. HMGN5 ENSGALG00000007131 340.00 2999.49 high mobility group nucleosome binding domain 5, transcript variant X1
54. PHB2 ENSGALG00000014567 340.00 2999.49 prohibitin 2 [Source:NCBI gene;Acc:771124]
55. GNB2L1 ENSGALG00000000122 339.45 2994.64 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
56. RPS28 ENSGALG00000024398 331.72 2926.45 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
57. RPS15 ENSGALG00000015195 324.54 2863.11 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
58. ANP32B ENSGALG00000037483 318.47 2809.56 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
59. RPS27A ENSGALG00000036790 316.26 2790.06 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
60. RPL14 ENSGALG00000043379 310.19 2736.51 ribosomal protein L14
61. TXN ENSGALG00000015704 307.43 2712.16 thioredoxin [Source:NCBI gene;Acc:396437]
62. RPL36 ENSGALG00000000474 300.26 2648.91 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
63. ALDOC ENSGALG00000026077 299.15 2639.11 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
64. RPL21 ENSGALG00000027035 287.56 2536.87 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
65. ENO1 ENSGALG00000002377 280.39 2473.61 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
66. RPS14 ENSGALG00000004588 270.45 2385.92 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
67. RPS7 ENSGALG00000016392 267.14 2356.72 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
68. RPL24 ENSGALG00000015339 263.28 2322.67 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
69. EIF5A2 ENSGALG00000009309 256.65 2264.18 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
70. SET ENSGALG00000004701 253.34 2234.98 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
71. RPL18A 248.93 2196.07 ribosomal protein L18a
72. RPL36AL ENSGALG00000004952 247.27 2181.43 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
73. RPL6 ENSGALG00000004818 246.17 2171.72 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
74. EEF1D 245.06 2161.93 eukaryotic translation elongation factor 1 delta, transcript variant X13
75. STMN1 ENSGALG00000001475 243.96 2152.23 stathmin 1 [Source:NCBI gene;Acc:396057]
76. RPL23 ENSGALG00000001634 242.86 2142.52 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
77. MT-ND1 MT-ND1 238.44 2103.53
78. MT-ND3 MT-ND3 236.78 2088.88
79. RPL5 ENSGALG00000005922 236.23 2084.03 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
80. LDHB ENSGALG00000035836 235.68 2079.18 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
81. UBB ENSGALG00000004509 232.92 2054.83 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
82. FKBP4 ENSGALG00000014331 228.50 2015.84 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
83. RPS20 ENSGALG00000014432 226.30 1996.43 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
84. CRHOA CRHOA 219.67 1937.94
85. HMGN2 HMGN2 219.67 1937.94
86. ENSGALG00000002696 ENSGALG00000002696 218.02 1923.38
87. TCEB3 ENSGALG00000034625 218.02 1923.38 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
88. SLC25A6_1 ENSGALG00000016691 214.71 1894.18 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
89. RPL37A ENSGALG00000011472 214.15 1889.24 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
90. RPLP2 ENSGALG00000034811 210.84 1860.04 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
91. RPS25 ENSGALG00000007699 209.19 1845.48 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
92. ENSGALG00000028992 ENSGALG00000028992 202.56 1786.99
93. ATP5G3 195.94 1728.59 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
94. RAN ENSGALG00000002569 194.84 1718.89 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
95. RPS13 ENSGALG00000006096 192.63 1699.39 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
96. AKAP12 ENSGALG00000036240 189.87 1675.04 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
97. RPL7 ENSGALG00000035252 189.87 1675.04 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
98. TMSB4X ENSGALG00000026383 186.56 1645.84 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
99. RPL31 ENSGALG00000016775 186.00 1640.90 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
100. HSPA8 ENSGALG00000006512 181.59 1601.99 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA