Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s76.

Sample reads: 113,429. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4360.41 38443.23
2. EEF1A EEF1A 1072.93 9459.41
3. MT-ND5 MT-ND5 1021.94 9009.86
4. gga-mir-3533 ENSGALG00000027736 1010.38 8907.94 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
5. RPLP0 ENSGALG00000023294 984.54 8680.12 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
6. RPL35A ENSGALG00000007611, ENSGALG00000041230 950.55 8380.45 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
7. CIRBP ENSGALG00000030918 935.59 8248.56 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
8. MT-ATP6 MT-ATP6 888.67 7834.89
9. MDK ENSGALG00000008367 884.59 7798.92 midkine [Source:NCBI gene;Acc:423196]
10. RPL23A ENSGALG00000003966 779.20 6869.76 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
11. GAPDH ENSGALG00000014442 765.60 6749.86 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. RPS10 ENSGALG00000002813 691.49 6096.47 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
13. RPLP1 ENSGALG00000030878 690.13 6084.48 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
14. RPL4 ENSGALG00000007711 675.85 5958.58 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
15. RPL15 ENSGALG00000011290 628.26 5539.01 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
16. RPL27A ENSGALG00000005948 582.02 5131.34 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
17. SNRPD1 ENSGALG00000041334 563.66 4969.47 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
18. RPL13 ENSGALG00000006179 543.95 4795.69 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
19. RPS23 ENSGALG00000015617 526.27 4639.82 ribosomal protein S23
20. RPS3A ENSGALG00000010077 497.71 4388.02 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
21. RPL7A ENSGALG00000003197 492.95 4346.06 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
22. RPL8 ENSGALG00000016232 477.31 4208.17 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
23. PPIA ENSGALG00000028600 475.27 4190.18 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
24. RPL26 RPL26 453.52 3998.43
25. MT-ND4 MT-ND4 444.68 3920.49
26. MT-CYB MT-CYB 442.64 3902.50
27. RPL19 ENSGALG00000001658 441.28 3890.51 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
28. RPSA 437.20 3854.54 ribosomal protein SA
29. RPS12 ENSGALG00000013990 435.84 3842.55 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
30. ANP32B ENSGALG00000037483 431.76 3806.58 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
31. RPS15A ENSGALG00000006771 431.08 3800.58 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
32. ALDOC ENSGALG00000026077 421.56 3716.65 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
33. RPS8 ENSGALG00000010124 418.16 3686.68 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
34. RPS21 ENSGALG00000005338 416.12 3668.69 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
35. RPS15 ENSGALG00000015195 412.72 3638.72 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
36. RPS2 ENSGALG00000005490 408.64 3602.74 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
37. RPL27 ENSGALG00000002837 399.80 3524.81 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
38. RPS4 RPS4 396.40 3494.83
39. RPL32 ENSGALG00000027142 389.60 3434.88 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
40. RPS6 ENSGALG00000015082 385.52 3398.91 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
41. RPL12 ENSGALG00000008806 373.96 3296.99 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
42. PHB2 ENSGALG00000014567 371.92 3279.01 prohibitin 2 [Source:NCBI gene;Acc:771124]
43. RPS16 ENSGALG00000026490 370.56 3267.01 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
44. RPL38 ENSGALG00000001465 369.20 3255.02 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
45. RPS11 ENSGALG00000017299 363.08 3201.07 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
46. RPS29 ENSGALG00000012229 352.89 3111.23 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
47. RPL37 ENSGALG00000014833 351.53 3099.24 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
48. TXN ENSGALG00000015704 348.81 3075.26 thioredoxin [Source:NCBI gene;Acc:396437]
49. GNB2L1 ENSGALG00000000122 344.73 3039.29 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
50. RPL29 ENSGALG00000026978 344.05 3033.29 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
51. NME2 ENSGALG00000002932 343.37 3027.30 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
52. RPS27A ENSGALG00000036790 333.17 2937.37 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
53. RPS28 ENSGALG00000024398 329.09 2901.40 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
54. HMGN5 ENSGALG00000007131 322.29 2841.45 high mobility group nucleosome binding domain 5, transcript variant X1
55. RPL35 ENSGALG00000035677 321.61 2835.45 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
56. MT-CO1 MT-CO1 316.85 2793.48
57. RAN ENSGALG00000002569 314.81 2775.50 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
58. gga-mir-3527 gga-mir-3527 310.73 2739.53
59. ENSGALG00000028649 ENSGALG00000028649 308.01 2715.55
60. RPL24 ENSGALG00000015339 299.17 2637.61 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
61. RPS14 ENSGALG00000004588 297.81 2625.62 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
62. RPL36 ENSGALG00000000474 288.97 2547.68 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
63. TMSB4X ENSGALG00000026383 284.21 2505.72 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
64. RPS7 ENSGALG00000016392 276.05 2433.77 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
65. RPL21 ENSGALG00000027035 275.37 2427.78 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
66. RPL14 ENSGALG00000043379 274.01 2415.79 ribosomal protein L14
67. EIF5A2 ENSGALG00000009309 271.97 2397.80 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
68. SET ENSGALG00000004701 265.17 2337.85 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
69. RPL18A 253.61 2235.93 ribosomal protein L18a
70. ATP5G3 249.54 2200.05 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
71. SLC25A6_1 ENSGALG00000016691 244.78 2158.08 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
72. TCEB3 ENSGALG00000034625 239.34 2110.12 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
73. HBG1 HBG1 238.66 2104.13
74. RPL36AL ENSGALG00000004952 236.62 2086.14 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
75. HBZ ENSGALG00000023740 230.50 2032.19 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
76. RPL23 ENSGALG00000001634 230.50 2032.19 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
77. ENSGALG00000002696 ENSGALG00000002696 227.78 2008.21
78. RPL6 ENSGALG00000004818 227.78 2008.21 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
79. RPS13 ENSGALG00000006096 227.78 2008.21 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
80. SFPQ ENSGALG00000002514 227.78 2008.21 splicing factor proline and glutamine rich [Source:HGNC Symbol;Acc:HGNC:10774]
81. ENO1 ENSGALG00000002377 227.10 2002.21 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
82. UBB ENSGALG00000004509 223.70 1972.23 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
83. RPL5 ENSGALG00000005922 220.30 1942.26 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
84. CRHOA CRHOA 218.94 1930.27
85. RPL31 ENSGALG00000016775 217.58 1918.28 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
86. FKBP4 ENSGALG00000014331 216.90 1912.28 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
87. RPL10A ENSGALG00000002644 212.82 1876.31 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
88. MT-ND3 MT-ND3 211.46 1864.32
89. EEF1D 208.74 1840.34 eukaryotic translation elongation factor 1 delta, transcript variant X13
90. LDHB ENSGALG00000035836 208.74 1840.34 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
91. RPLP2 ENSGALG00000034811 204.66 1804.37 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
92. NDUFB9 ENSGALG00000042242 202.62 1786.38 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
93. PRDX1 ENSGALG00000010243 201.26 1774.39 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
94. ENSGALG00000028992 ENSGALG00000028992 199.90 1762.40
95. RPL7 ENSGALG00000035252 199.90 1762.40 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
96. STMN1 ENSGALG00000001475 199.22 1756.41 stathmin 1 [Source:NCBI gene;Acc:396057]
97. RPS25 ENSGALG00000007699 190.38 1678.47 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
98. HMGN2 HMGN2 189.02 1666.48
99. RPL37A ENSGALG00000011472 189.02 1666.48 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
100. RPS20 ENSGALG00000014432 189.02 1666.48 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA