Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s74.

Sample reads: 113,371. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4100.99 36175.18
2. EEF1A EEF1A 1113.37 9821.13
3. MT-ND5 MT-ND5 1035.86 9137.41
4. MT-ATP6 MT-ATP6 1023.06 9024.50
5. CIRBP ENSGALG00000030918 890.29 7853.32 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
6. gga-mir-3533 ENSGALG00000027736 851.87 7514.42 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. RPLP0 ENSGALG00000023294 785.15 6925.88 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
8. RPL35A ENSGALG00000007611, ENSGALG00000041230 772.35 6812.97 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
9. GAPDH ENSGALG00000014442 765.61 6753.51 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. RPS10 ENSGALG00000002813 742.02 6545.42 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
11. RPL23A ENSGALG00000003966 705.63 6224.42 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
12. RPLP1 ENSGALG00000030878 699.56 6170.88 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
13. RPL15 ENSGALG00000011290 684.73 6040.06 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
14. MDK ENSGALG00000008367 640.25 5647.70 midkine [Source:NCBI gene;Acc:423196]
15. RPL4 ENSGALG00000007711 613.97 5415.88 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
16. MT-CYB MT-CYB 501.42 4423.07
17. SNRPD1 ENSGALG00000041334 500.75 4417.16 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
18. RPS23 ENSGALG00000015617 496.03 4375.52 ribosomal protein S23
19. RPSA 482.55 4256.61 ribosomal protein SA
20. RPL8 ENSGALG00000016232 457.61 4036.62 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. MT-ND4 MT-ND4 452.89 3994.98
22. RPS6 ENSGALG00000015082 450.87 3977.16 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
23. PPIA ENSGALG00000028600 448.18 3953.43 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
24. RPL19 ENSGALG00000001658 435.37 3840.44 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
25. RPL27A ENSGALG00000005948 432.00 3810.71 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
26. RPS29 ENSGALG00000012229 432.00 3810.71 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
27. RPS21 ENSGALG00000005338 427.96 3775.07 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
28. RPS8 ENSGALG00000010124 425.94 3757.25 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
29. RPL13 ENSGALG00000006179 425.26 3751.25 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
30. RPL38 ENSGALG00000001465 424.59 3745.34 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
31. gga-mir-3527 gga-mir-3527 422.57 3727.53
32. RPS15A ENSGALG00000006771 416.50 3673.98 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
33. RPL7A ENSGALG00000003197 415.83 3668.07 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
34. GNB2L1 ENSGALG00000000122 404.37 3566.98 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
35. HMGN5 ENSGALG00000007131 393.59 3471.89 high mobility group nucleosome binding domain 5, transcript variant X1
36. MT-CO1 MT-CO1 387.52 3418.35
37. RPS2 ENSGALG00000005490 387.52 3418.35 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
38. RPL29 ENSGALG00000026978 386.85 3412.44 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
39. RPL26 RPL26 386.17 3406.44
40. RPS16 ENSGALG00000026490 378.09 3335.16 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
41. HBG1 HBG1 374.72 3305.44
42. RPL32 ENSGALG00000027142 372.69 3287.53 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
43. RPS11 ENSGALG00000017299 365.28 3222.17 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
44. RPL37 ENSGALG00000014833 364.61 3216.26 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
45. RPS12 ENSGALG00000013990 357.19 3150.80 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
46. RPL12 ENSGALG00000008806 355.85 3138.98 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
47. RPL27 ENSGALG00000002837 355.85 3138.98 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
48. PHB2 ENSGALG00000014567 352.48 3109.26 prohibitin 2 [Source:NCBI gene;Acc:771124]
49. RPL35 ENSGALG00000035677 339.67 2996.26 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
50. NME2 ENSGALG00000002932 334.95 2954.62 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
51. RPS27A ENSGALG00000036790 334.28 2948.71 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
52. ANP32B ENSGALG00000037483 326.87 2883.35 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
53. HBZ ENSGALG00000023740 326.19 2877.35 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
54. RPL36 ENSGALG00000000474 318.78 2811.99 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
55. RPS15 ENSGALG00000015195 318.78 2811.99 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
56. STMN1 ENSGALG00000001475 316.76 2794.17 stathmin 1 [Source:NCBI gene;Acc:396057]
57. TXN ENSGALG00000015704 314.73 2776.26 thioredoxin [Source:NCBI gene;Acc:396437]
58. RPS3A ENSGALG00000010077 310.69 2740.62 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
59. RPL21 ENSGALG00000027035 287.10 2532.53 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
60. RPL24 ENSGALG00000015339 285.08 2514.72 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
61. RPS28 ENSGALG00000024398 283.73 2502.81 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
62. RPS4 RPS4 278.34 2455.26
63. HBE 273.62 2413.63 hemoglobin subunit epsilon
64. MT-ND3 MT-ND3 272.28 2401.81
65. ENO1 ENSGALG00000002377 270.25 2383.90 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
66. EIF5A2 ENSGALG00000009309 265.54 2342.35 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
67. ALDOC ENSGALG00000026077 262.84 2318.53 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
68. RPL6 ENSGALG00000004818 262.17 2312.62 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
69. RPS7 ENSGALG00000016392 258.80 2282.90 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
70. RPL23 ENSGALG00000001634 258.12 2276.90 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
71. RPS20 ENSGALG00000014432 253.41 2235.35 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
72. ENSGALG00000028649 ENSGALG00000028649 252.73 2229.35
73. RPS14 ENSGALG00000004588 245.99 2169.90 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
74. RPL14 ENSGALG00000043379 243.30 2146.17 ribosomal protein L14
75. RPL18A 243.30 2146.17 ribosomal protein L18a
76. SET ENSGALG00000004701 239.93 2116.44 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
77. RPL7 ENSGALG00000035252 238.58 2104.53 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
78. LDHB ENSGALG00000035836 236.56 2086.72 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
79. TCEB3 ENSGALG00000034625 235.21 2074.81 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
80. MT-ND1 MT-ND1 232.51 2050.99
81. CRHOA CRHOA 230.49 2033.17
82. RPL36AL ENSGALG00000004952 229.82 2027.26 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
83. SLC25A6_1 ENSGALG00000016691 225.77 1991.54 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
84. ATP5G3 225.10 1985.63 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
85. RPL5 ENSGALG00000005922 222.40 1961.81 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
86. RAN ENSGALG00000002569 221.73 1955.90 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
87. ACTC1 ENSGALG00000009844 219.71 1938.08 actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
88. UBB ENSGALG00000004509 219.71 1938.08 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
89. MYH15 ENSGALG00000015358 210.27 1854.81 myosin, heavy chain 15 [Source:NCBI gene;Acc:395534]
90. ENSGALG00000002696 ENSGALG00000002696 208.92 1842.90
91. HNRNPDL ENSGALG00000023199 205.55 1813.17 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
92. MYL3 ENSGALG00000005448 205.55 1813.17 myosin, light chain 3, alkali; ventricular, skeletal, slow [Source:NCBI gene;Acc:396067]
93. EEF1D 204.88 1807.26 eukaryotic translation elongation factor 1 delta, transcript variant X13
94. ENSGALG00000028992 ENSGALG00000028992 204.88 1807.26
95. PRDX1 ENSGALG00000010243 201.51 1777.54 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
96. RPS13 ENSGALG00000006096 200.84 1771.63 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
97. HSPA8 ENSGALG00000006512 198.14 1747.81 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
98. H3-IX H3-IX 194.10 1712.17
99. RPL37A ENSGALG00000011472 192.08 1694.35 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
100. HMGN2 HMGN2 188.03 1658.63
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA