Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s70.

Sample reads: 113,605. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4342.52 38226.43
2. RPLP0 ENSGALG00000023294 1134.16 9983.81 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. MT-ND5 MT-ND5 1095.05 9639.53
4. CIRBP ENSGALG00000030918 1071.59 9433.02 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
5. MT-ATP6 MT-ATP6 1038.17 9138.83
6. RPL35A ENSGALG00000007611, ENSGALG00000041230 956.39 8418.93 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
7. GAPDH ENSGALG00000014442 881.73 7761.71 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
8. gga-mir-3533 ENSGALG00000027736 878.18 7730.46 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. EEF1A EEF1A 866.80 7630.29
10. RPS23 ENSGALG00000015617 839.78 7392.43 ribosomal protein S23
11. RPL23A ENSGALG00000003966 831.96 7323.60 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
12. RPL4 ENSGALG00000007711 757.29 6666.29 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
13. RPS10 ENSGALG00000002813 751.60 6616.20 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
14. RPL15 ENSGALG00000011290 734.54 6466.03 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
15. RPLP1 ENSGALG00000030878 676.94 5958.98 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
16. RPL13 ENSGALG00000006179 614.37 5408.19 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
17. HBZ ENSGALG00000023740 603.70 5314.26 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
18. MDK ENSGALG00000008367 596.59 5251.68 midkine [Source:NCBI gene;Acc:423196]
19. SNRPD1 ENSGALG00000041334 578.81 5095.16 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
20. PPIA ENSGALG00000028600 525.48 4625.71 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
21. RPS15 ENSGALG00000015195 521.22 4588.21 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
22. HBG1 HBG1 515.53 4538.12
23. RPS11 ENSGALG00000017299 515.53 4538.12 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
24. RPS21 ENSGALG00000005338 513.39 4519.28 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
25. RPS12 ENSGALG00000013990 483.53 4256.43 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
26. RPL27 ENSGALG00000002837 480.69 4231.43 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
27. RPL27A ENSGALG00000005948 470.73 4143.75 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
28. RPL35 ENSGALG00000035677 468.60 4125.00 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
29. RPS15A ENSGALG00000006771 467.89 4118.75 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
30. MT-ND4 MT-ND4 467.18 4112.50
31. MT-CYB MT-CYB 466.46 4106.16
32. RPSA 465.04 4093.66 ribosomal protein SA
33. gga-mir-3527 gga-mir-3527 455.80 4012.33
34. RPL19 ENSGALG00000001658 455.09 4006.08 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
35. RPS2 ENSGALG00000005490 450.82 3968.49 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
36. ALDOC ENSGALG00000026077 447.98 3943.49 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
37. RPS29 ENSGALG00000012229 442.29 3893.40 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
38. RPS8 ENSGALG00000010124 441.58 3887.15 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
39. RPL21 ENSGALG00000027035 433.75 3818.22 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
40. RPS3A ENSGALG00000010077 428.78 3774.47 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
41. RPL29 ENSGALG00000026978 425.22 3743.14 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
42. RPL7A ENSGALG00000003197 418.82 3686.80 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
43. RPL37A ENSGALG00000011472 405.31 3567.87 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
44. RPL36 ENSGALG00000000474 398.20 3505.28 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
45. RPL26 RPL26 395.36 3480.28
46. RPS16 ENSGALG00000026490 393.22 3461.45 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
47. GNB2L1 ENSGALG00000000122 386.82 3405.11 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
48. RPL6 ENSGALG00000004818 381.14 3355.11 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
49. RPL8 ENSGALG00000016232 374.74 3298.77 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
50. RPL32 ENSGALG00000027142 372.60 3279.93 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
51. TXN ENSGALG00000015704 363.36 3198.59 thioredoxin [Source:NCBI gene;Acc:396437]
52. RPS4 RPS4 350.56 3085.92
53. RPL38 ENSGALG00000001465 342.03 3010.83 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
54. RPL14 ENSGALG00000043379 339.18 2985.74 ribosomal protein L14
55. ENSGALG00000028649 ENSGALG00000028649 326.38 2873.07
56. HBE 326.38 2873.07 hemoglobin subunit epsilon
57. RPS6 ENSGALG00000015082 321.41 2829.32 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
58. RPL12 ENSGALG00000008806 319.27 2810.48 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
59. MT-CO1 MT-CO1 310.74 2735.39
60. LDHB ENSGALG00000035836 305.76 2691.55 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
61. RPS27A ENSGALG00000036790 305.76 2691.55 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
62. RPL37 ENSGALG00000014833 303.63 2672.80 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
63. RPL24 ENSGALG00000015339 301.50 2654.05 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
64. TMSB4X ENSGALG00000026383 300.78 2647.71 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
65. NME2 ENSGALG00000002932 296.52 2610.21 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
66. RPL36AL ENSGALG00000004952 295.81 2603.96 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
67. RPS28 ENSGALG00000024398 294.38 2591.37 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
68. PHB2 ENSGALG00000014567 292.96 2578.87 prohibitin 2 [Source:NCBI gene;Acc:771124]
69. RPL23 ENSGALG00000001634 289.41 2547.62 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
70. RPS14 ENSGALG00000004588 287.27 2528.79 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
71. HMGN5 ENSGALG00000007131 278.03 2447.45 high mobility group nucleosome binding domain 5, transcript variant X1
72. RPL18A 270.92 2384.86 ribosomal protein L18a
73. ATP5G3 267.36 2353.52 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
74. MT-ND3 MT-ND3 265.23 2334.77
75. RPS7 ENSGALG00000016392 262.39 2309.77 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
76. TCEB3 ENSGALG00000034625 256.70 2259.68 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
77. MT-ND1 MT-ND1 246.74 2172.01
78. RPS13 ENSGALG00000006096 234.65 2065.58 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
79. H3-IX H3-IX 233.94 2059.33
80. PRDX1 ENSGALG00000010243 233.94 2059.33 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
81. ENO1 ENSGALG00000002377 228.97 2015.58 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
82. RPL5 ENSGALG00000005922 228.25 2009.24 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
83. STMN1 ENSGALG00000001475 224.70 1977.99 stathmin 1 [Source:NCBI gene;Acc:396057]
84. EIF4G2 ENSGALG00000005587 222.57 1959.24 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
85. ENSGALG00000002696 ENSGALG00000002696 221.85 1952.91
86. RPL7 ENSGALG00000035252 219.01 1927.91 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
87. MYH15 ENSGALG00000015358 218.30 1921.66 myosin, heavy chain 15 [Source:NCBI gene;Acc:395534]
88. RPL31 ENSGALG00000016775 216.88 1909.16 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
89. ACTC1 ENSGALG00000009844 215.46 1896.66 actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
90. EEF1D 211.90 1865.32 eukaryotic translation elongation factor 1 delta, transcript variant X13
91. FKBP4 ENSGALG00000014331 211.19 1859.07 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
92. HMGN2 HMGN2 209.06 1840.32
93. CRHOA CRHOA 204.79 1802.73
94. UBB ENSGALG00000004509 204.08 1796.48 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
95. ANP32B ENSGALG00000037483 198.39 1746.39 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
96. SLC25A6_1 ENSGALG00000016691 197.68 1740.14 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
97. RAN ENSGALG00000002569 196.26 1727.64 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
98. SEC61G ENSGALG00000037863 195.55 1721.39 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
99. MYL3 ENSGALG00000005448 193.41 1702.55 myosin, light chain 3, alkali; ventricular, skeletal, slow [Source:NCBI gene;Acc:396067]
100. RPLP2 ENSGALG00000034811 189.15 1665.05 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA