Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s69.

Sample reads: 113,392. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4616.71 40716.45
2. MT-ATP6 MT-ATP6 1195.12 10540.20
3. EEF1A EEF1A 1117.39 9854.67
4. MT-ND5 MT-ND5 1080.00 9524.91
5. gga-mir-3533 ENSGALG00000027736 937.58 8268.86 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. CIRBP ENSGALG00000030918 874.68 7714.12 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
7. GAPDH ENSGALG00000014442 849.17 7489.14 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
8. MDK ENSGALG00000008367 826.02 7284.97 midkine [Source:NCBI gene;Acc:423196]
9. RPLP0 ENSGALG00000023294 779.14 6871.52 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
10. RPL35A ENSGALG00000007611, ENSGALG00000041230 768.46 6777.33 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
11. RPL4 ENSGALG00000007711 722.18 6369.17 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
12. RPL23A ENSGALG00000003966 696.07 6138.89 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
13. RPS10 ENSGALG00000002813 696.07 6138.89 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
14. RPL15 ENSGALG00000011290 668.18 5892.92 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
15. RPLP1 ENSGALG00000030878 637.32 5620.76 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
16. RPS23 ENSGALG00000015617 569.67 5024.13 ribosomal protein S23
17. HBG1 HBG1 526.95 4647.36
18. HBZ ENSGALG00000023740 490.15 4322.81 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
19. RPL27A ENSGALG00000005948 488.37 4307.11 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
20. SNRPD1 ENSGALG00000041334 485.41 4281.01 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
21. MT-CYB MT-CYB 478.88 4223.42
22. RPS6 ENSGALG00000015082 464.64 4097.83 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
23. RPL19 ENSGALG00000001658 463.45 4087.33 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
24. PPIA ENSGALG00000028600 458.70 4045.44 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
25. RPS2 ENSGALG00000005490 446.24 3935.55 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
26. MT-ND4 MT-ND4 443.87 3914.65
27. RPL26 RPL26 434.97 3836.16
28. RPL13 ENSGALG00000006179 433.19 3820.46 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
29. RPL38 ENSGALG00000001465 421.32 3715.77 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
30. RPS8 ENSGALG00000010124 417.76 3684.38 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
31. gga-mir-3527 gga-mir-3527 414.20 3652.98
32. RPSA 408.86 3605.89 ribosomal protein SA
33. ALDOC ENSGALG00000026077 408.26 3600.59 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
34. RPL29 ENSGALG00000026978 407.67 3595.39 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
35. RPS29 ENSGALG00000012229 407.08 3590.19 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
36. RPS12 ENSGALG00000013990 404.70 3569.20 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
37. MT-CO1 MT-CO1 401.74 3543.09
38. RPS21 ENSGALG00000005338 396.40 3496.00 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
39. RPL8 ENSGALG00000016232 391.65 3454.10 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
40. RPS11 ENSGALG00000017299 390.46 3443.61 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
41. RPL32 ENSGALG00000027142 388.68 3427.91 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
42. RPL7A ENSGALG00000003197 387.49 3417.42 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
43. RPS15A ENSGALG00000006771 386.31 3407.01 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
44. HMGN5 ENSGALG00000007131 385.12 3396.51 high mobility group nucleosome binding domain 5, transcript variant X1
45. RPL35 ENSGALG00000035677 382.75 3375.61 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
46. RPL21 ENSGALG00000027035 377.41 3328.52 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
47. RPS16 ENSGALG00000026490 375.63 3312.82 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
48. RPL12 ENSGALG00000008806 368.51 3250.02 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
49. PHB2 ENSGALG00000014567 366.13 3229.03 prohibitin 2 [Source:NCBI gene;Acc:771124]
50. RPS3A ENSGALG00000010077 355.45 3134.84 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
51. RPS27A ENSGALG00000036790 354.26 3124.35 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
52. RPL37 ENSGALG00000014833 352.48 3108.65 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
53. RPL27 ENSGALG00000002837 347.14 3061.55 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
54. GNB2L1 ENSGALG00000000122 340.02 2998.76 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
55. RPS28 ENSGALG00000024398 338.84 2988.35 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
56. NME2 ENSGALG00000002932 332.90 2935.97 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
57. ENSGALG00000028649 ENSGALG00000028649 329.34 2904.57
58. RPS4 RPS4 325.78 2873.17
59. HBE 324.59 2862.68 hemoglobin subunit epsilon
60. RPL36 ENSGALG00000000474 317.47 2799.88 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
61. ANP32B ENSGALG00000037483 308.57 2721.39 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
62. RPS15 ENSGALG00000015195 304.42 2684.79 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
63. TXN ENSGALG00000015704 303.23 2674.30 thioredoxin [Source:NCBI gene;Acc:396437]
64. RPS14 ENSGALG00000004588 291.96 2574.90 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
65. LDHB ENSGALG00000035836 283.65 2501.61 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
66. RPL6 ENSGALG00000004818 264.66 2334.13 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
67. RPL23 ENSGALG00000001634 259.91 2292.24 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
68. RPL14 ENSGALG00000043379 255.16 2250.35 ribosomal protein L14
69. RPL36AL ENSGALG00000004952 250.42 2208.55 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
70. RPS7 ENSGALG00000016392 246.26 2171.86 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
71. RPS20 ENSGALG00000014432 243.89 2150.95 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
72. ACTC1 ENSGALG00000009844 242.70 2140.46 actin, alpha, cardiac muscle 1 [Source:NCBI gene;Acc:423298]
73. SET ENSGALG00000004701 239.14 2109.06 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
74. RPL24 ENSGALG00000015339 237.36 2093.36 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
75. EIF5A2 ENSGALG00000009309 236.77 2088.16 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
76. RPL18A 232.02 2046.27 ribosomal protein L18a
77. FKBP4 ENSGALG00000014331 229.06 2020.16 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
78. ENO1 ENSGALG00000002377 225.49 1988.68 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
79. ENSGALG00000018384 ENSGALG00000018384 225.49 1988.68
80. UBB ENSGALG00000004509 225.49 1988.68 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
81. RPS25 ENSGALG00000007699 224.90 1983.47 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
82. MT-ND3 MT-ND3 221.34 1952.08
83. CRHOA CRHOA 220.15 1941.58
84. HMGN2 HMGN2 219.56 1936.38
85. RPL5 ENSGALG00000005922 219.56 1936.38 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
86. ATP5G3 217.78 1920.68 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
87. ENSGALG00000002696 ENSGALG00000002696 216.59 1910.19
88. RPL37A ENSGALG00000011472 214.22 1889.28 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
89. STMN1 ENSGALG00000001475 211.85 1868.38 stathmin 1 [Source:NCBI gene;Acc:396057]
90. ENSGALG00000028992 ENSGALG00000028992 210.66 1857.89
91. RPL10A ENSGALG00000002644 208.88 1842.19 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
92. RPL31 ENSGALG00000016775 208.88 1842.19 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
93. SLC25A6_1 ENSGALG00000016691 206.51 1821.29 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
94. RPS13 ENSGALG00000006096 204.73 1805.59 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
95. MT-ND1 MT-ND1 199.98 1763.70
96. MYH15 ENSGALG00000015358 199.98 1763.70 myosin, heavy chain 15 [Source:NCBI gene;Acc:395534]
97. TMSB4X ENSGALG00000026383 198.79 1753.20 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
98. PRDX1 ENSGALG00000010243 197.01 1737.50 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
99. EEF1D 195.23 1721.80 eukaryotic translation elongation factor 1 delta, transcript variant X13
100. RPLP2 ENSGALG00000034811 194.04 1711.31 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA