Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s64.

Sample reads: 113,445. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3946.93 34792.93
2. EEF1A EEF1A 1179.48 10397.34
3. CIRBP ENSGALG00000030918 1053.14 9283.63 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
4. gga-mir-3533 ENSGALG00000027736 1012.22 8922.91 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
5. MT-ATP6 MT-ATP6 980.63 8644.44
6. RPL35A ENSGALG00000007611, ENSGALG00000041230 926.07 8163.48 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
7. MDK ENSGALG00000008367 821.98 7245.91 midkine [Source:NCBI gene;Acc:423196]
8. RPLP0 ENSGALG00000023294 789.67 6961.09 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
9. RPL15 ENSGALG00000011290 775.32 6834.59 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
10. RPL23A ENSGALG00000003966 732.96 6461.18 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
11. GAPDH ENSGALG00000014442 724.35 6385.28 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. RPS10 ENSGALG00000002813 716.45 6315.64 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
13. RPLP1 ENSGALG00000030878 669.07 5897.98 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
14. MT-ND5 MT-ND5 668.35 5891.63
15. RPL4 ENSGALG00000007711 615.23 5423.37 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
16. RPS23 ENSGALG00000015617 590.82 5208.19 ribosomal protein S23
17. SNRPD1 ENSGALG00000041334 568.56 5011.96 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
18. RPL27A ENSGALG00000005948 505.39 4455.11 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
19. RPL13 ENSGALG00000006179 498.93 4398.16 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
20. RPL19 ENSGALG00000001658 488.88 4309.57 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
21. PPIA ENSGALG00000028600 486.01 4284.27 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
22. RPS21 ENSGALG00000005338 463.04 4081.78 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
23. RPSA 455.86 4018.49 ribosomal protein SA
24. RPS12 ENSGALG00000013990 435.04 3834.96 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
25. RPS11 ENSGALG00000017299 434.32 3828.61 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
26. RPS2 ENSGALG00000005490 432.17 3809.66 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
27. RPL32 ENSGALG00000027142 420.68 3708.37 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
28. HMGN5 ENSGALG00000007131 417.81 3683.07 high mobility group nucleosome binding domain 5, transcript variant X1
29. RPS6 ENSGALG00000015082 417.81 3683.07 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
30. RPS15A ENSGALG00000006771 417.09 3676.73 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
31. RPL29 ENSGALG00000026978 415.66 3664.12 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
32. RPS8 ENSGALG00000010124 415.66 3664.12 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
33. RPS3A ENSGALG00000010077 411.35 3626.13 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
34. RPS29 ENSGALG00000012229 407.04 3588.13 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
35. RPL38 ENSGALG00000001465 402.73 3550.14 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
36. RPL8 ENSGALG00000016232 402.73 3550.14 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
37. RPL26 RPL26 402.02 3543.88
38. RPL35 ENSGALG00000035677 394.84 3480.59 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
39. RPL7A ENSGALG00000003197 390.53 3442.60 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
40. MT-CYB MT-CYB 389.81 3436.25
41. GNB2L1 ENSGALG00000000122 384.79 3392.00 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
42. RPL12 ENSGALG00000008806 379.76 3347.66 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
43. RPS28 ENSGALG00000024398 372.58 3284.36 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
44. RPL21 ENSGALG00000027035 371.86 3278.02 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
45. MT-ND4 MT-ND4 367.56 3240.11
46. RPS15 ENSGALG00000015195 367.56 3240.11 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
47. RPL27 ENSGALG00000002837 366.84 3233.76 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
48. gga-mir-3527 gga-mir-3527 363.25 3202.12
49. ENSGALG00000028649 ENSGALG00000028649 359.66 3170.47
50. NME2 ENSGALG00000002932 350.33 3088.22 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
51. RPS16 ENSGALG00000026490 348.89 3075.53 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
52. ALDOC ENSGALG00000026077 344.58 3037.54 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
53. HBG1 HBG1 342.43 3018.58
54. RPL37 ENSGALG00000014833 335.97 2961.64 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
55. ANP32B ENSGALG00000037483 332.38 2929.99 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
56. PHB2 ENSGALG00000014567 332.38 2929.99 prohibitin 2 [Source:NCBI gene;Acc:771124]
57. TXN ENSGALG00000015704 326.64 2879.39 thioredoxin [Source:NCBI gene;Acc:396437]
58. RPL6 ENSGALG00000004818 325.92 2873.05 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
59. RPS4 RPS4 316.59 2790.80
60. RPL36 ENSGALG00000000474 314.43 2771.76 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
61. MT-CO1 MT-CO1 312.28 2752.81
62. RPS27A ENSGALG00000036790 310.13 2733.85 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
63. EIF5A2 ENSGALG00000009309 292.90 2581.97 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
64. RPL36AL ENSGALG00000004952 283.56 2499.63 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
65. LDHB ENSGALG00000035836 277.10 2442.69 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
66. RPS20 ENSGALG00000014432 274.23 2417.39 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
67. RPS14 ENSGALG00000004588 267.77 2360.44 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
68. TCEB3 ENSGALG00000034625 263.46 2322.45 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
69. RPL23 ENSGALG00000001634 259.87 2290.80 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
70. RPL18A 255.57 2252.90 ribosomal protein L18a
71. RPS7 ENSGALG00000016392 250.54 2208.56 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
72. RPL14 ENSGALG00000043379 248.39 2189.60 ribosomal protein L14
73. RPL24 ENSGALG00000015339 247.67 2183.26 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
74. RPL37A ENSGALG00000011472 244.80 2157.96 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
75. HBZ ENSGALG00000023740 239.06 2107.36 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
76. ATP5G3 233.31 2056.67 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
77. PRDX1 ENSGALG00000010243 232.59 2050.32 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
78. SET ENSGALG00000004701 231.88 2044.07 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
79. RPS13 ENSGALG00000006096 230.44 2031.37 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
80. EEF1D 229.72 2025.03 eukaryotic translation elongation factor 1 delta, transcript variant X13
81. ENSGALG00000002696 ENSGALG00000002696 225.42 1987.12
82. ENSGALG00000028992 ENSGALG00000028992 224.70 1980.77
83. HMGN2 HMGN2 222.54 1961.73
84. CRHOA CRHOA 221.83 1955.47
85. RPL5 ENSGALG00000005922 215.37 1898.53 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
86. HSPA8 ENSGALG00000006512 213.21 1879.49 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
87. STMN1 ENSGALG00000001475 213.21 1879.49 stathmin 1 [Source:NCBI gene;Acc:396057]
88. ENO1 ENSGALG00000002377 212.49 1873.14 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
89. RPL10A ENSGALG00000002644 212.49 1873.14 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
90. HNRNPDL ENSGALG00000023199 211.78 1866.88 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
91. UBB ENSGALG00000004509 211.06 1860.53 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
92. SLC25A6_1 ENSGALG00000016691 206.75 1822.54 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
93. RPLP2 ENSGALG00000034811 206.03 1816.19 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
94. AKAP12 ENSGALG00000036240 201.73 1778.29 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
95. EIF4G2 ENSGALG00000005587 201.01 1771.94 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
96. MT-ND3 MT-ND3 201.01 1771.94
97. RPS25 ENSGALG00000007699 197.42 1740.29 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
98. RPL7 ENSGALG00000035252 194.55 1714.99 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
99. H3-IX H3-IX 192.39 1695.95
100. ENSGALG00000022570 ENSGALG00000022570 183.06 1613.71
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA