Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s61.

Sample reads: 113,585. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3321.67 29244.75
2. EEF1A EEF1A 1367.64 12041.02
3. MT-ATP6 MT-ATP6 1170.94 10309.22
4. gga-mir-3533 ENSGALG00000027736 1121.08 9870.25 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
5. MT-ND5 MT-ND5 1015.80 8943.34
6. MDK ENSGALG00000008367 961.32 8463.68 midkine [Source:NCBI gene;Acc:423196]
7. CIRBP ENSGALG00000030918 932.69 8211.62 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
8. RPL35A ENSGALG00000007611, ENSGALG00000041230 888.36 7821.33 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
9. RPLP0 ENSGALG00000023294 839.42 7390.45 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
10. RPLP1 ENSGALG00000030878 794.17 6992.06 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
11. RPL23A ENSGALG00000003966 759.08 6683.11 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
12. RPS10 ENSGALG00000002813 749.85 6601.85 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
13. GAPDH ENSGALG00000014442 737.84 6496.11 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
14. RPL4 ENSGALG00000007711 726.76 6398.56 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
15. RPL15 ENSGALG00000011290 682.43 6008.27 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
16. HBG1 HBG1 578.08 5089.55
17. RPL27A ENSGALG00000005948 570.70 5024.57 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
18. RPS21 ENSGALG00000005338 508.82 4479.77 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
19. PPIA ENSGALG00000028600 505.13 4447.28 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
20. RPL38 ENSGALG00000001465 504.21 4439.18 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
21. MT-ND4 MT-ND4 494.05 4349.73
22. RPS8 ENSGALG00000010124 490.35 4317.15 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
23. SNRPD1 ENSGALG00000041334 489.43 4309.05 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
24. HBZ ENSGALG00000023740 486.66 4284.67 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
25. RPSA 469.12 4130.24 ribosomal protein SA
26. RPL26 RPL26 449.72 3959.44
27. RPL19 ENSGALG00000001658 447.88 3943.24 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
28. MT-CYB MT-CYB 446.03 3926.95
29. RPL29 ENSGALG00000026978 438.64 3861.89 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
30. RPS6 ENSGALG00000015082 434.95 3829.40 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
31. RPL8 ENSGALG00000016232 423.87 3731.85 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
32. RPS11 ENSGALG00000017299 415.56 3658.69 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
33. RPS29 ENSGALG00000012229 415.56 3658.69 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
34. RPS23 ENSGALG00000015617 412.78 3634.21 ribosomal protein S23
35. RPS3A ENSGALG00000010077 411.86 3626.11 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
36. RPL12 ENSGALG00000008806 410.94 3618.01 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
37. gga-mir-3527 gga-mir-3527 408.17 3593.62
38. RPS28 ENSGALG00000024398 397.09 3496.07 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
39. ENSGALG00000028649 ENSGALG00000028649 396.16 3487.88
40. NME2 ENSGALG00000002932 393.39 3463.50 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
41. RPL37 ENSGALG00000014833 393.39 3463.50 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
42. RPS15A ENSGALG00000006771 391.55 3447.30 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
43. RPS27A ENSGALG00000036790 389.70 3431.01 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
44. RPL7A ENSGALG00000003197 387.85 3414.72 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
45. RPS2 ENSGALG00000005490 386.93 3406.62 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
46. RPL27 ENSGALG00000002837 385.08 3390.33 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
47. RPL32 ENSGALG00000027142 380.46 3349.66 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
48. HBE 375.85 3309.07 hemoglobin subunit epsilon
49. ALDOC ENSGALG00000026077 373.08 3284.68 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
50. MT-CO1 MT-CO1 371.23 3268.39
51. RPS4 RPS4 370.31 3260.29
52. RPL13 ENSGALG00000006179 369.38 3252.11 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
53. RPS12 ENSGALG00000013990 368.46 3244.01 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
54. PHB2 ENSGALG00000014567 366.61 3227.72 prohibitin 2 [Source:NCBI gene;Acc:771124]
55. TXN ENSGALG00000015704 366.61 3227.72 thioredoxin [Source:NCBI gene;Acc:396437]
56. RPL36 ENSGALG00000000474 363.84 3203.33 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
57. RPS16 ENSGALG00000026490 362.92 3195.23 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
58. LDHB ENSGALG00000035836 354.61 3122.07 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
59. RPS15 ENSGALG00000015195 346.30 3048.90 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
60. RPL35 ENSGALG00000035677 343.53 3024.52 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
61. GNB2L1 ENSGALG00000000122 341.68 3008.23 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
62. ANP32B ENSGALG00000037483 339.83 2991.94 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
63. RPL21 ENSGALG00000027035 337.06 2967.55 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
64. HMGN5 ENSGALG00000007131 319.52 2813.13 high mobility group nucleosome binding domain 5, transcript variant X1
65. RPL5 ENSGALG00000005922 310.28 2731.78 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
66. RPL18A 299.20 2634.23 ribosomal protein L18a
67. RPS14 ENSGALG00000004588 297.35 2617.94 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
68. RPS20 ENSGALG00000014432 288.12 2536.67 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
69. RPL23 ENSGALG00000001634 285.35 2512.29 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
70. EIF5A2 ENSGALG00000009309 281.65 2479.71 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
71. RPL24 ENSGALG00000015339 278.88 2455.32 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
72. RPS7 ENSGALG00000016392 278.88 2455.32 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
73. ATP5G3 277.96 2447.22 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
74. SET ENSGALG00000004701 273.34 2406.55 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
75. RPL14 ENSGALG00000043379 269.65 2374.06 ribosomal protein L14
76. ENSGALG00000002696 ENSGALG00000002696 260.41 2292.71
77. ENO1 ENSGALG00000002377 246.56 2170.77 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
78. EEF1D 244.72 2154.57 eukaryotic translation elongation factor 1 delta, transcript variant X13
79. RPL36AL ENSGALG00000004952 242.87 2138.28 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
80. FKBP4 ENSGALG00000014331 230.86 2032.54 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
81. MT-ND1 MT-ND1 229.02 2016.34
82. HSPA8 ENSGALG00000006512 228.09 2008.16 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
83. RAN ENSGALG00000002569 226.25 1991.96 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
84. RPLP2 ENSGALG00000034811 225.32 1983.77 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
85. TCEB3 ENSGALG00000034625 224.40 1975.67 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
86. MT-ND3 MT-ND3 223.48 1967.57
87. ENSGALG00000028992 ENSGALG00000028992 222.55 1959.38
88. STMN1 ENSGALG00000001475 221.63 1951.28 stathmin 1 [Source:NCBI gene;Acc:396057]
89. UBB ENSGALG00000004509 221.63 1951.28 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
90. RPS25 ENSGALG00000007699 214.24 1886.22 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
91. RPL7 ENSGALG00000035252 211.47 1861.83 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
92. HMGN2 HMGN2 207.78 1829.34
93. RPL10A ENSGALG00000002644 207.78 1829.34 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
94. RPS13 ENSGALG00000006096 206.85 1821.15 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
95. TMSB4X ENSGALG00000026383 206.85 1821.15 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
96. CRHOA CRHOA 202.24 1780.57
97. RPL6 ENSGALG00000004818 202.24 1780.57 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
98. H3-IX H3-IX 193.93 1707.40
99. PRDX1 ENSGALG00000010243 193.93 1707.40 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
100. HNRNPDL ENSGALG00000023199 191.16 1683.02 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA