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Experiment Chicken_E3_embryo, section s6.

Sample reads: 113,766. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3928.13 34529.89
2. CIRBP ENSGALG00000030918 1332.03 11709.09 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
3. EEF1A EEF1A 1204.50 10588.05
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 1118.87 9835.33 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. RPS10 ENSGALG00000002813 894.53 7863.29 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
6. RPL15 ENSGALG00000011290 855.44 7519.67 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
7. gga-mir-3533 ENSGALG00000027736 844.27 7421.48 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. RPS23 ENSGALG00000015617 789.35 6938.71 ribosomal protein S23
9. RPL23A ENSGALG00000003966 788.42 6930.54 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
10. RPLP1 ENSGALG00000030878 770.73 6775.04 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
11. MT-ATP6 MT-ATP6 759.56 6676.85
12. RPL4 ENSGALG00000007711 739.09 6496.91 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
13. MT-ND5 MT-ND5 717.68 6308.70
14. SNRPD1 ENSGALG00000041334 701.85 6169.55 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
15. RPLP0 ENSGALG00000023294 681.37 5989.52 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
16. RPS15 ENSGALG00000015195 634.83 5580.42 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
17. RPL13 ENSGALG00000006179 608.77 5351.34 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
18. GAPDH ENSGALG00000014442 592.94 5212.19 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
19. RPL35 ENSGALG00000035677 533.37 4688.54 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
20. RPS21 ENSGALG00000005338 531.51 4672.19 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
21. RPL29 ENSGALG00000026978 528.72 4647.67 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
22. RPL27A ENSGALG00000005948 527.78 4639.40 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
23. PPIA ENSGALG00000028600 476.59 4189.42 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
24. RPS15A ENSGALG00000006771 466.35 4099.41 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
25. RPS3A ENSGALG00000010077 457.97 4025.75 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
26. RPL19 ENSGALG00000001658 455.18 4001.22 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
27. RPL36 ENSGALG00000000474 454.25 3993.05 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
28. RPS29 ENSGALG00000012229 445.87 3919.38 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
29. RPSA 443.08 3894.86 ribosomal protein SA
30. RPS2 ENSGALG00000005490 424.46 3731.18 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
31. RPL8 ENSGALG00000016232 421.67 3706.65 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
32. RPS8 ENSGALG00000010124 419.81 3690.30 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
33. RPL27 ENSGALG00000002837 417.95 3673.95 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
34. RPS12 ENSGALG00000013990 417.02 3665.78 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
35. gga-mir-3527 gga-mir-3527 416.08 3657.52
36. RPL38 ENSGALG00000001465 408.64 3592.11 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
37. RPL7A ENSGALG00000003197 399.33 3510.28 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
38. RPS11 ENSGALG00000017299 390.95 3436.61 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
39. RPS4 RPS4 390.95 3436.61
40. RPL6 ENSGALG00000004818 387.23 3403.91 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
41. RPL12 ENSGALG00000008806 383.51 3371.21 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
42. MDK ENSGALG00000008367 377.92 3322.07 midkine [Source:NCBI gene;Acc:423196]
43. MT-ND4 MT-ND4 357.44 3142.05
44. ANP32B ENSGALG00000037483 355.58 3125.70 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
45. TXN ENSGALG00000015704 352.79 3101.17 thioredoxin [Source:NCBI gene;Acc:396437]
46. EIF5A2 ENSGALG00000009309 351.86 3092.99 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
47. RPS27A ENSGALG00000036790 347.20 3052.03 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
48. RPL37A ENSGALG00000011472 341.62 3002.98 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
49. RPS16 ENSGALG00000026490 339.76 2986.63 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
50. FKBP4 ENSGALG00000014331 338.82 2978.37 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
51. RPL32 ENSGALG00000027142 337.89 2970.19 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
52. NME2 ENSGALG00000002932 336.03 2953.84 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
53. RPS6 ENSGALG00000015082 327.65 2880.18 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
54. GNB2L1 ENSGALG00000000122 326.72 2872.00 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
55. ENSGALG00000028649 ENSGALG00000028649 323.93 2847.48
56. LDHB ENSGALG00000035836 317.42 2790.25 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
57. RPS14 ENSGALG00000004588 317.42 2790.25 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
58. RPS28 ENSGALG00000024398 317.42 2790.25 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
59. ATP5G3 316.48 2781.99 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
60. RPL23 ENSGALG00000001634 315.55 2773.82 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
61. RPL37 ENSGALG00000014833 312.76 2749.29 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
62. RPL24 ENSGALG00000015339 310.90 2732.94 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
63. RPL18A 307.18 2700.24 ribosomal protein L18a
64. MT-CYB MT-CYB 303.45 2667.45
65. TCEB3 ENSGALG00000034625 298.80 2626.58 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
66. RPL26 RPL26 293.21 2577.44
67. MT-CO1 MT-CO1 282.04 2479.25
68. EIF4G2 ENSGALG00000005587 277.39 2438.37 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
69. TMSB4X ENSGALG00000026383 273.67 2405.67 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
70. HBG1 HBG1 271.80 2389.23
71. RPS13 ENSGALG00000006096 270.87 2381.06 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
72. RPL36AL ENSGALG00000004952 266.22 2340.18 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
73. RPS17 ENSGALG00000002157 261.57 2299.31 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
74. RPL14 ENSGALG00000043379 258.77 2274.70 ribosomal protein L14
75. RPS7 ENSGALG00000016392 255.98 2250.17 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
76. PRDX1 ENSGALG00000010243 248.53 2184.68 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
77. HNRNPDL ENSGALG00000023199 246.67 2168.33 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
78. RPL21 ENSGALG00000027035 246.67 2168.33 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
79. MT-ND3 MT-ND3 245.74 2160.16
80. RPL5 ENSGALG00000005922 243.88 2143.81 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
81. PHB2 ENSGALG00000014567 242.95 2135.63 prohibitin 2 [Source:NCBI gene;Acc:771124]
82. ENO1 ENSGALG00000002377 238.29 2094.67 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
83. HMGN5 ENSGALG00000007131 233.64 2053.79 high mobility group nucleosome binding domain 5, transcript variant X1
84. ID1 ENSGALG00000034661 231.78 2037.44 inhibitor of DNA binding 1, HLH protein [Source:NCBI gene;Acc:395282]
85. RPL7 ENSGALG00000035252 230.85 2029.27 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
86. HMGN2 HMGN2 229.92 2021.09
87. HSPA8 ENSGALG00000006512 228.06 2004.74 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
88. SSR1 ENSGALG00000012798 227.12 1996.48 signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
89. GPC4 ENSGALG00000006080 226.19 1988.30 glypican 4 [Source:HGNC Symbol;Acc:HGNC:4452]
90. H3-IX H3-IX 224.33 1971.95
91. RAN ENSGALG00000002569 224.33 1971.95 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
92. SLC25A6_1 ENSGALG00000016691 219.68 1931.08 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
93. HBZ ENSGALG00000023740 218.75 1922.90 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
94. RPL31 ENSGALG00000016775 216.89 1906.55 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
95. SET ENSGALG00000004701 215.95 1898.29 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
96. ENSGALG00000002696 ENSGALG00000002696 214.09 1881.94
97. CCT4 ENSGALG00000008812 211.30 1857.41 chaperonin containing TCP1 subunit 4 [Source:NCBI gene;Acc:395414]
98. PKM ENSGALG00000001992 210.37 1849.24 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
99. MT-ND1 MT-ND1 207.58 1824.71
100. RPL10A ENSGALG00000002644 200.13 1759.23 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA