Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s58.

Sample reads: 113,520. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3829.66 33738.37
2. MT-ATP6 MT-ATP6 1103.42 9720.86
3. EEF1A EEF1A 1036.58 9132.02
4. MT-ND5 MT-ND5 1011.38 8910.01
5. gga-mir-3533 ENSGALG00000027736 954.40 8408.03 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. CIRBP ENSGALG00000030918 943.44 8311.48 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
7. RPLP0 ENSGALG00000023294 798.80 7037.23 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
8. RPL35A ENSGALG00000007611, ENSGALG00000041230 797.71 7027.63 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
9. MDK ENSGALG00000008367 752.78 6631.81 midkine [Source:NCBI gene;Acc:423196]
10. RPL23A ENSGALG00000003966 735.25 6477.37 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
11. RPLP1 ENSGALG00000030878 712.24 6274.66 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
12. RPS10 ENSGALG00000002813 667.31 5878.84 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
13. RPL4 ENSGALG00000007711 630.06 5550.68 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
14. RPL15 ENSGALG00000011290 571.98 5039.00 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
15. GAPDH ENSGALG00000014442 569.79 5019.71 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
16. SNRPD1 ENSGALG00000041334 553.36 4874.97 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
17. RPS23 ENSGALG00000015617 536.92 4730.13 ribosomal protein S23
18. RPS21 ENSGALG00000005338 528.15 4652.87 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
19. HMGN5 ENSGALG00000007131 524.87 4623.98 high mobility group nucleosome binding domain 5, transcript variant X1
20. MT-ND4 MT-ND4 501.86 4421.26
21. MT-CYB MT-CYB 478.84 4218.46
22. HBG1 HBG1 473.37 4170.27
23. RPL19 ENSGALG00000001658 472.27 4160.58 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
24. RPS11 ENSGALG00000017299 472.27 4160.58 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
25. RPL27A ENSGALG00000005948 470.08 4141.29 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
26. RPL8 ENSGALG00000016232 464.60 4093.01 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
27. RPS29 ENSGALG00000012229 460.22 4054.43 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
28. RPS6 ENSGALG00000015082 452.55 3986.86 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
29. RPS8 ENSGALG00000010124 442.68 3899.90 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
30. HBZ ENSGALG00000023740 440.49 3880.61 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
31. PPIA ENSGALG00000028600 437.21 3851.71 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
32. RPS3A ENSGALG00000010077 433.92 3822.73 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
33. RPL26 RPL26 432.82 3813.04
34. RPL13 ENSGALG00000006179 422.96 3726.17 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
35. RPL7A ENSGALG00000003197 413.10 3639.31 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
36. ANP32B ENSGALG00000037483 402.14 3542.76 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
37. RPL29 ENSGALG00000026978 392.28 3455.89 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
38. RPSA 385.71 3398.01 ribosomal protein SA
39. gga-mir-3527 gga-mir-3527 380.23 3349.73
40. RPL27 ENSGALG00000002837 375.84 3311.06 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
41. RPS15A ENSGALG00000006771 375.84 3311.06 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
42. RPS12 ENSGALG00000013990 365.98 3224.19 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
43. RPS2 ENSGALG00000005490 365.98 3224.19 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
44. RPS27A ENSGALG00000036790 365.98 3224.19 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
45. RPS28 ENSGALG00000024398 360.50 3175.92 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
46. PHB2 ENSGALG00000014567 355.02 3127.64 prohibitin 2 [Source:NCBI gene;Acc:771124]
47. RPS16 ENSGALG00000026490 352.83 3108.35 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
48. RPL38 ENSGALG00000001465 350.64 3089.05 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
49. RPS15 ENSGALG00000015195 347.35 3060.07 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
50. RPL37 ENSGALG00000014833 346.26 3050.47 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
51. GNB2L1 ENSGALG00000000122 345.16 3040.78 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
52. ENSGALG00000018384 ENSGALG00000018384 335.30 2953.91
53. TXN ENSGALG00000015704 335.30 2953.91 thioredoxin [Source:NCBI gene;Acc:396437]
54. RPL32 ENSGALG00000027142 332.01 2924.93 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
55. NME2 ENSGALG00000002932 330.92 2915.32 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
56. RPL37A ENSGALG00000011472 330.92 2915.32 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
57. RPL35 ENSGALG00000035677 328.73 2896.03 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
58. SET ENSGALG00000004701 328.73 2896.03 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
59. RPL21 ENSGALG00000027035 326.53 2876.65 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
60. RPL36 ENSGALG00000000474 318.86 2809.08 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
61. RPL12 ENSGALG00000008806 316.67 2789.79 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
62. MT-CO1 MT-CO1 303.52 2673.94
63. RPS20 ENSGALG00000014432 302.43 2664.33 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
64. ALDOC ENSGALG00000026077 298.04 2625.66 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
65. RPS4 RPS4 293.66 2587.07
66. ENSGALG00000028649 ENSGALG00000028649 292.57 2577.47
67. RPL23 ENSGALG00000001634 292.57 2577.47 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
68. EIF5A2 ENSGALG00000009309 291.47 2567.78 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
69. RPL6 ENSGALG00000004818 290.37 2558.09 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
70. HBE 283.80 2500.21 hemoglobin subunit epsilon
71. RPS7 ENSGALG00000016392 271.75 2394.05 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
72. LDHB ENSGALG00000035836 270.65 2384.36 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
73. ENSGALG00000002696 ENSGALG00000002696 265.17 2336.08
74. RPL14 ENSGALG00000043379 265.17 2336.08 ribosomal protein L14
75. RAN ENSGALG00000002569 256.41 2258.91 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
76. MT-ND3 MT-ND3 255.31 2249.22
77. RPL24 ENSGALG00000015339 253.12 2229.93 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
78. RPS14 ENSGALG00000004588 249.83 2200.94 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
79. ATP5G3 247.64 2181.65 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
80. ENO1 ENSGALG00000002377 247.64 2181.65 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
81. RPL18A 244.35 2152.66 ribosomal protein L18a
82. RPL5 ENSGALG00000005922 234.49 2065.80 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
83. HNRNPDL ENSGALG00000023199 227.92 2007.92 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
84. RPL7 ENSGALG00000035252 222.44 1959.64 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
85. TMSB4X ENSGALG00000026383 222.44 1959.64 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
86. TCEB3 ENSGALG00000034625 216.96 1911.36 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
87. RPL10A ENSGALG00000002644 214.77 1892.07 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
88. MT-ND1 MT-ND1 212.58 1872.78
89. SLC25A6_1 ENSGALG00000016691 212.58 1872.78 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
90. RPL36AL ENSGALG00000004952 211.48 1863.09 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
91. CRHOA CRHOA 209.29 1843.79
92. HSPA8 ENSGALG00000006512 208.19 1834.10 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
93. SEC61G ENSGALG00000037863 208.19 1834.10 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
94. RPLP2 ENSGALG00000034811 207.10 1824.50 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
95. MBD3 ENSGALG00000001101 202.71 1785.83 methyl-CpG binding domain protein 3 [Source:NCBI gene;Acc:770153]
96. PRDX1 ENSGALG00000010243 202.71 1785.83 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
97. EIF4G2 ENSGALG00000005587 199.43 1756.93 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
98. STMN1 ENSGALG00000001475 197.24 1737.64 stathmin 1 [Source:NCBI gene;Acc:396057]
99. UBB ENSGALG00000004509 196.14 1727.95 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
100. EEF1D 192.85 1698.96 eukaryotic translation elongation factor 1 delta, transcript variant X13
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA