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Experiment Chicken_E3_embryo, section s56.

Sample reads: 113,692. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3985.32 35055.79
2. EEF1A EEF1A 1091.03 9596.95
3. RPL35A ENSGALG00000007611, ENSGALG00000041230 1062.47 9345.73 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
4. CIRBP ENSGALG00000030918 1034.76 9101.99 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
5. gga-mir-3533 ENSGALG00000027736 966.72 8503.49 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. MT-ATP6 MT-ATP6 964.20 8481.32
7. RPS10 ENSGALG00000002813 834.02 7336.23 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
8. RPLP1 ENSGALG00000030878 747.51 6575.27 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
9. MT-ND5 MT-ND5 715.59 6294.49
10. RPL23A ENSGALG00000003966 696.28 6124.64 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
11. MDK ENSGALG00000008367 644.20 5666.53 midkine [Source:NCBI gene;Acc:423196]
12. RPL15 ENSGALG00000011290 644.20 5666.53 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
13. GAPDH ENSGALG00000014442 623.20 5481.81 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
14. RPS23 ENSGALG00000015617 598.85 5267.62 ribosomal protein S23
15. RPLP0 ENSGALG00000023294 588.77 5178.96 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
16. RPL4 ENSGALG00000007711 540.89 4757.79 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
17. SNRPD1 ENSGALG00000041334 536.70 4720.94 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
18. RPL19 ENSGALG00000001658 521.58 4587.94 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
19. RPS21 ENSGALG00000005338 509.82 4484.49 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
20. HMGN5 ENSGALG00000007131 485.46 4270.22 high mobility group nucleosome binding domain 5, transcript variant X1
21. RPS8 ENSGALG00000010124 481.26 4233.27 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
22. RPL13 ENSGALG00000006179 466.98 4107.66 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
23. MT-ND4 MT-ND4 466.14 4100.27
24. RPL27A ENSGALG00000005948 465.30 4092.89 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
25. RPSA 464.46 4085.50 ribosomal protein SA
26. RPS29 ENSGALG00000012229 445.99 3923.03 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
27. PPIA ENSGALG00000028600 441.79 3886.09 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
28. RPL8 ENSGALG00000016232 440.95 3878.70 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
29. RPS15 ENSGALG00000015195 435.91 3834.36 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
30. RPL29 ENSGALG00000026978 430.03 3782.64 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
31. MT-CYB MT-CYB 425.83 3745.70
32. gga-mir-3527 gga-mir-3527 423.31 3723.53
33. RPS11 ENSGALG00000017299 422.47 3716.14 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
34. RPL27 ENSGALG00000002837 418.27 3679.20 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
35. RPS15A ENSGALG00000006771 404.83 3560.98 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
36. RPS6 ENSGALG00000015082 404.83 3560.98 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
37. RPL7A ENSGALG00000003197 391.39 3442.76 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
38. RPS2 ENSGALG00000005490 390.55 3435.37 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
39. RPS3A ENSGALG00000010077 389.71 3427.98 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
40. NME2 ENSGALG00000002932 380.47 3346.70 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
41. RPL38 ENSGALG00000001465 380.47 3346.70 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
42. ANP32B ENSGALG00000037483 375.43 3302.37 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
43. RPL26 RPL26 372.08 3272.90
44. RPL12 ENSGALG00000008806 368.72 3243.35 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
45. RPL37 ENSGALG00000014833 367.04 3228.57 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
46. RPS12 ENSGALG00000013990 362.84 3191.62 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
47. RPL35 ENSGALG00000035677 359.48 3162.07 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
48. RPS4 RPS4 354.44 3117.74
49. MT-CO1 MT-CO1 351.08 3088.18
50. PHB2 ENSGALG00000014567 346.04 3043.85 prohibitin 2 [Source:NCBI gene;Acc:771124]
51. RPL32 ENSGALG00000027142 332.60 2925.63 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
52. RPL23 ENSGALG00000001634 325.04 2859.13 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
53. GNB2L1 ENSGALG00000000122 322.52 2836.96 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
54. TXN ENSGALG00000015704 321.68 2829.57 thioredoxin [Source:NCBI gene;Acc:396437]
55. RPS27A ENSGALG00000036790 320.84 2822.18 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
56. RPL36 ENSGALG00000000474 311.60 2740.91 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
57. EIF5A2 ENSGALG00000009309 310.76 2733.52 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
58. SET ENSGALG00000004701 309.92 2726.13 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
59. ALDOC ENSGALG00000026077 309.08 2718.74 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
60. RPS16 ENSGALG00000026490 304.04 2674.41 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
61. RPL24 ENSGALG00000015339 299.84 2637.46 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
62. RPL6 ENSGALG00000004818 299.00 2630.07 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
63. TCEB3 ENSGALG00000034625 295.64 2600.52 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
64. RPL18A 292.28 2570.96 ribosomal protein L18a
65. ENSGALG00000028649 ENSGALG00000028649 289.77 2548.88
66. RPS28 ENSGALG00000024398 288.09 2534.11 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
67. ATP5G3 285.57 2511.94 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
68. RPL21 ENSGALG00000027035 284.73 2504.55 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
69. LDHB ENSGALG00000035836 282.21 2482.38 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
70. RPS14 ENSGALG00000004588 263.73 2319.83 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
71. RPS20 ENSGALG00000014432 260.37 2290.27 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
72. ENO1 ENSGALG00000002377 258.69 2275.50 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
73. RPL14 ENSGALG00000043379 256.17 2253.33 ribosomal protein L14
74. RPL37A ENSGALG00000011472 252.81 2223.77 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
75. HSPA8 ENSGALG00000006512 236.01 2076.00 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
76. RPL5 ENSGALG00000005922 235.17 2068.61 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
77. EIF4G2 ENSGALG00000005587 233.49 2053.83 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
78. HBG1 HBG1 228.45 2009.50
79. RPL7 ENSGALG00000035252 225.93 1987.33 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
80. RPS7 ENSGALG00000016392 225.93 1987.33 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
81. ENSGALG00000002696 ENSGALG00000002696 224.25 1972.55
82. PRDX1 ENSGALG00000010243 223.41 1965.17 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
83. TMSB4X ENSGALG00000026383 222.57 1957.78 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
84. RPS25 ENSGALG00000007699 220.05 1935.61 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
85. MT-ND3 MT-ND3 215.85 1898.67
86. RPL36AL ENSGALG00000004952 215.85 1898.67 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
87. RPS13 ENSGALG00000006096 213.33 1876.50 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
88. SLC25A6_1 ENSGALG00000016691 212.49 1869.11 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
89. RPS17 ENSGALG00000002157 208.29 1832.17 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
90. CRHOA CRHOA 207.45 1824.78
91. FKBP4 ENSGALG00000014331 206.62 1817.48 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
92. UBB ENSGALG00000004509 205.78 1810.09 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
93. MT-ND1 MT-ND1 202.42 1780.53
94. SEC61G ENSGALG00000037863 202.42 1780.53 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
95. RPLP2 ENSGALG00000034811 199.06 1750.98 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
96. RPL10A ENSGALG00000002644 198.22 1743.59 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
97. ENSGALG00000028992 ENSGALG00000028992 193.18 1699.26
98. HNRNPDL ENSGALG00000023199 190.66 1677.09 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
99. HMGN2 HMGN2 189.82 1669.70
100. RAN ENSGALG00000002569 188.14 1654.92 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA