Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s51.

Sample reads: 113,410. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4668.61 41166.98
2. MT-ATP6 MT-ATP6 1196.80 10553.17
3. MT-ND5 MT-ND5 941.41 8301.19
4. CIRBP ENSGALG00000030918 926.45 8169.27 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
5. EEF1A EEF1A 917.91 8093.97
6. RPL35A ENSGALG00000007611, ENSGALG00000041230 889.05 7839.49 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
7. gga-mir-3533 ENSGALG00000027736 850.59 7500.35 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. RPLP1 ENSGALG00000030878 775.79 6840.78 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
9. RPS10 ENSGALG00000002813 756.55 6671.12 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. RPLP0 ENSGALG00000023294 738.39 6510.99 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
11. RPL23A ENSGALG00000003966 728.77 6426.17 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
12. RPL4 ENSGALG00000007711 699.92 6171.77 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
13. RPL15 ENSGALG00000011290 668.93 5898.51 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
14. MDK ENSGALG00000008367 622.98 5493.33 midkine [Source:NCBI gene;Acc:423196]
15. GAPDH ENSGALG00000014442 609.09 5370.85 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
16. RPS23 ENSGALG00000015617 606.95 5351.98 ribosomal protein S23
17. MT-ND4 MT-ND4 489.41 4315.53
18. RPS21 ENSGALG00000005338 485.13 4277.79 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
19. RPL8 ENSGALG00000016232 479.79 4230.70 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. gga-mir-3527 gga-mir-3527 477.65 4211.83
21. RPL19 ENSGALG00000001658 470.17 4145.88 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
22. RPL27A ENSGALG00000005948 466.97 4117.66 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
23. RPL13 ENSGALG00000006179 461.62 4070.48 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
24. MT-CO1 MT-CO1 460.56 4061.14
25. RPS8 ENSGALG00000010124 457.35 4032.83 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
26. RPS29 ENSGALG00000012229 454.14 4004.53 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
27. RPS15 ENSGALG00000015195 452.01 3985.74 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
28. HMGN5 ENSGALG00000007131 446.66 3938.57 high mobility group nucleosome binding domain 5, transcript variant X1
29. RPS12 ENSGALG00000013990 441.32 3891.48 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
30. RPS3A ENSGALG00000010077 429.57 3787.87 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
31. RPSA 428.50 3778.44 ribosomal protein SA
32. RPL38 ENSGALG00000001465 427.43 3769.00 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
33. SNRPD1 ENSGALG00000041334 427.43 3769.00 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
34. PPIA ENSGALG00000028600 422.09 3721.92 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
35. RPL6 ENSGALG00000004818 409.26 3608.78 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
36. MT-CYB MT-CYB 407.13 3590.00
37. RPL7A ENSGALG00000003197 399.65 3524.04 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
38. RPL27 ENSGALG00000002837 396.44 3495.74 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
39. TXN ENSGALG00000015704 395.37 3486.30 thioredoxin [Source:NCBI gene;Acc:396437]
40. RPL29 ENSGALG00000026978 391.10 3448.65 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
41. RPS15A ENSGALG00000006771 390.03 3439.22 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
42. RPL12 ENSGALG00000008806 388.96 3429.78 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
43. RPS11 ENSGALG00000017299 385.76 3401.56 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
44. RPS2 ENSGALG00000005490 385.76 3401.56 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
45. ANP32B ENSGALG00000037483 384.69 3392.13 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
46. RPS6 ENSGALG00000015082 384.69 3392.13 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
47. RPL21 ENSGALG00000027035 378.28 3335.61 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
48. RPL26 RPL26 372.93 3288.43
49. RPL35 ENSGALG00000035677 365.45 3222.47 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
50. RPS16 ENSGALG00000026490 361.18 3184.82 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
51. RPS28 ENSGALG00000024398 350.49 3090.56 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
52. HBG1 HBG1 349.42 3081.12
53. RPL36 ENSGALG00000000474 338.74 2986.95 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
54. RPS27A ENSGALG00000036790 337.67 2977.51 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
55. ENSGALG00000018384 ENSGALG00000018384 331.26 2920.99
56. GNB2L1 ENSGALG00000000122 321.64 2836.16 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
57. RPL37 ENSGALG00000014833 318.44 2807.95 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
58. RPL32 ENSGALG00000027142 315.23 2779.64 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
59. RPS4 RPS4 315.23 2779.64
60. NME2 ENSGALG00000002932 302.41 2666.60 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
61. RPS7 ENSGALG00000016392 301.34 2657.16 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
62. RPS14 ENSGALG00000004588 283.17 2496.94 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
63. RPL24 ENSGALG00000015339 282.10 2487.51 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
64. ENSGALG00000028649 ENSGALG00000028649 281.04 2478.16
65. RPL37A ENSGALG00000011472 278.90 2459.29 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
66. SET ENSGALG00000004701 273.56 2412.20 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
67. RPL23 ENSGALG00000001634 272.49 2402.77 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
68. TMSB4X ENSGALG00000026383 269.28 2374.46 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
69. PHB2 ENSGALG00000014567 263.94 2327.38 prohibitin 2 [Source:NCBI gene;Acc:771124]
70. EIF5A2 ENSGALG00000009309 259.66 2289.64 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
71. TCEB3 ENSGALG00000034625 259.66 2289.64 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
72. RPL14 ENSGALG00000043379 258.60 2280.29 ribosomal protein L14
73. RPLP2 ENSGALG00000034811 251.12 2214.33 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
74. HBZ ENSGALG00000023740 246.84 2176.59 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
75. RPS20 ENSGALG00000014432 244.70 2157.72 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
76. RPL36AL ENSGALG00000004952 238.29 2101.20 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
77. ATP5G3 232.95 2054.11 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
78. EIF4G2 ENSGALG00000005587 230.81 2035.24 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
79. ENSGALG00000002696 ENSGALG00000002696 230.81 2035.24
80. PRDX1 ENSGALG00000010243 230.81 2035.24 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
81. HSPA8 ENSGALG00000006512 227.61 2007.02 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
82. ENO1 ENSGALG00000002377 225.47 1988.15 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
83. ALDOC ENSGALG00000026077 221.20 1950.50 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
84. MT-ND3 MT-ND3 221.20 1950.50
85. STMN1 ENSGALG00000001475 216.92 1912.76 stathmin 1 [Source:NCBI gene;Acc:396057]
86. RPS25 ENSGALG00000007699 215.85 1903.33 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
87. CRHOA CRHOA 214.78 1893.89
88. RPL18A 212.65 1875.11 ribosomal protein L18a
89. MT-ND1 MT-ND1 211.58 1865.68
90. RPL5 ENSGALG00000005922 210.51 1856.24 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
91. RPL7 ENSGALG00000035252 210.51 1856.24 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
92. NCL ENSGALG00000032930 209.44 1846.80 nucleolin [Source:NCBI gene;Acc:396201]
93. UBB ENSGALG00000004509 208.37 1837.37 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
94. SLC25A6_1 ENSGALG00000016691 205.17 1809.15 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
95. RPS13 ENSGALG00000006096 196.62 1733.76 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
96. EEF1D 193.41 1705.46 eukaryotic translation elongation factor 1 delta, transcript variant X13
97. HMGN2 HMGN2 193.41 1705.46
98. ENSGALG00000028992 ENSGALG00000028992 189.14 1667.80
99. RAN ENSGALG00000002569 187.00 1648.93 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
100. RPL31 ENSGALG00000016775 187.00 1648.93 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA