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Experiment Chicken_E3_embryo, section s49.

Sample reads: 113,757. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4377.28 38479.63
2. RPL35A ENSGALG00000007611, ENSGALG00000041230 1261.12 11086.21 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
3. CIRBP ENSGALG00000030918 1108.25 9742.36 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
4. EEF1A EEF1A 984.05 8650.55
5. gga-mir-3533 ENSGALG00000027736 944.25 8300.68 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. RPLP1 ENSGALG00000030878 888.51 7810.68 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
7. RPS10 ENSGALG00000002813 835.97 7348.81 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
8. MT-ATP6 MT-ATP6 834.38 7334.84
9. RPL15 ENSGALG00000011290 810.49 7124.83 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
10. MT-ND5 MT-ND5 800.94 7040.87
11. RPS23 ENSGALG00000015617 742.02 6522.92 ribosomal protein S23
12. RPL4 ENSGALG00000007711 738.84 6494.97 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
13. RPL23A ENSGALG00000003966 646.48 5683.05 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
14. RPL13 ENSGALG00000006179 592.34 5207.12 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
15. GAPDH ENSGALG00000014442 576.42 5067.17 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
16. SNRPD1 ENSGALG00000041334 574.83 5053.19 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
17. MDK ENSGALG00000008367 562.09 4941.20 midkine [Source:NCBI gene;Acc:423196]
18. RPL27A ENSGALG00000005948 562.09 4941.20 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
19. RPS8 ENSGALG00000010124 544.57 4787.19 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
20. RPS12 ENSGALG00000013990 533.43 4689.26 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
21. RPL19 ENSGALG00000001658 528.65 4647.24 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
22. RPS21 ENSGALG00000005338 525.47 4619.28 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
23. RPLP0 ENSGALG00000023294 519.10 4563.29 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
24. HMGN5 ENSGALG00000007131 501.58 4409.27 high mobility group nucleosome binding domain 5, transcript variant X1
25. RPS15 ENSGALG00000015195 501.58 4409.27 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
26. RPS15A ENSGALG00000006771 499.99 4395.29 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
27. RPL29 ENSGALG00000026978 480.88 4227.30 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
28. RPS3A ENSGALG00000010077 458.59 4031.36 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
29. gga-mir-3527 gga-mir-3527 457.00 4017.38
30. RPL35 ENSGALG00000035677 453.81 3989.34 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
31. RPL7A ENSGALG00000003197 449.03 3947.32 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
32. RPS2 ENSGALG00000005490 447.44 3933.34 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
33. HBG1 HBG1 445.85 3919.36
34. RPL8 ENSGALG00000016232 444.26 3905.38 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
35. MT-ND4 MT-ND4 439.48 3863.36
36. RPSA 434.70 3821.34 ribosomal protein SA
37. RPL38 ENSGALG00000001465 423.56 3723.42 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
38. PPIA ENSGALG00000028600 421.96 3709.35 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
39. RPL32 ENSGALG00000027142 415.60 3653.44 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
40. RPL21 ENSGALG00000027035 409.23 3597.44 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
41. RPS29 ENSGALG00000012229 404.45 3555.42 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
42. RPL27 ENSGALG00000002837 401.26 3527.38 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
43. MT-CYB MT-CYB 385.34 3387.43
44. RPL12 ENSGALG00000008806 383.75 3373.46 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
45. HBZ ENSGALG00000023740 377.38 3317.46 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
46. RPL36 ENSGALG00000000474 374.19 3289.42 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
47. RPS6 ENSGALG00000015082 372.60 3275.44 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
48. RPS4 RPS4 369.42 3247.48
49. RPS11 ENSGALG00000017299 363.05 3191.49 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
50. RPS16 ENSGALG00000026490 359.86 3163.44 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
51. ANP32B ENSGALG00000037483 355.09 3121.51 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
52. RPL26 RPL26 355.09 3121.51
53. RPS28 ENSGALG00000024398 353.49 3107.45 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
54. TXN ENSGALG00000015704 351.90 3093.47 thioredoxin [Source:NCBI gene;Acc:396437]
55. RPL6 ENSGALG00000004818 347.13 3051.54 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
56. GNB2L1 ENSGALG00000000122 339.16 2981.48 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
57. RPL24 ENSGALG00000015339 326.43 2869.57 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
58. EIF5A2 ENSGALG00000009309 318.46 2799.51 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
59. MT-CO1 MT-CO1 315.28 2771.55
60. RPL37A ENSGALG00000011472 304.13 2673.53 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
61. NME2 ENSGALG00000002932 299.36 2631.60 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
62. RPS7 ENSGALG00000016392 299.36 2631.60 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
63. TMSB4X ENSGALG00000026383 296.17 2603.56 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
64. RPL23 ENSGALG00000001634 294.58 2589.58 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
65. RPL37 ENSGALG00000014833 292.99 2575.61 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
66. RPS27A ENSGALG00000036790 292.99 2575.61 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
67. RPL14 ENSGALG00000043379 286.62 2519.61 ribosomal protein L14
68. SET ENSGALG00000004701 285.03 2505.63 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
69. RPL36AL ENSGALG00000004952 281.84 2477.59 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
70. RPS14 ENSGALG00000004588 273.88 2407.61 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
71. RPS20 ENSGALG00000014432 273.88 2407.61 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
72. RPL18A 265.92 2337.64 ribosomal protein L18a
73. ENSGALG00000028649 ENSGALG00000028649 261.14 2295.62
74. ENSGALG00000028992 ENSGALG00000028992 259.55 2281.64
75. LDHB ENSGALG00000035836 248.40 2183.63 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
76. ATP5G3 246.81 2169.65 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
77. HBE 246.81 2169.65 hemoglobin subunit epsilon
78. PRDX1 ENSGALG00000010243 245.22 2155.67 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
79. MT-ND3 MT-ND3 243.62 2141.61
80. HSPA8 ENSGALG00000006512 242.03 2127.63 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
81. TCEB3 ENSGALG00000034625 242.03 2127.63 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
82. ENO1 ENSGALG00000002377 240.44 2113.65 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
83. RPS17 ENSGALG00000002157 240.44 2113.65 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
84. EIF4G2 ENSGALG00000005587 238.85 2099.67 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
85. RPL7 ENSGALG00000035252 235.66 2071.63 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
86. RPS25 ENSGALG00000007699 235.66 2071.63 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
87. UBB ENSGALG00000004509 232.48 2043.68 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
88. MT-ND1 MT-ND1 230.89 2029.70
89. CRHOA CRHOA 227.70 2001.66
90. RPS13 ENSGALG00000006096 227.70 2001.66 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
91. RPL31 ENSGALG00000016775 226.11 1987.68 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
92. PHB2 ENSGALG00000014567 224.52 1973.70 prohibitin 2 [Source:NCBI gene;Acc:771124]
93. RPL5 ENSGALG00000005922 224.52 1973.70 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
94. STMN1 ENSGALG00000001475 218.15 1917.70 stathmin 1 [Source:NCBI gene;Acc:396057]
95. HMGN2 HMGN2 207.00 1819.69
96. RPLP2 ENSGALG00000034811 207.00 1819.69 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
97. FKBP4 ENSGALG00000014331 200.63 1763.69 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
98. RAN ENSGALG00000002569 197.45 1735.74 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
99. ENSGALG00000002696 ENSGALG00000002696 192.67 1693.72
100. H3-IX H3-IX 191.08 1679.74
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA