Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s47.

Sample reads: 113,643. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4345.51 38241.02
2. RPLP0 ENSGALG00000023294 1260.79 11095.11 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. EEF1A EEF1A 1054.86 9282.90
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 1028.24 9048.64 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. MT-ND5 MT-ND5 977.81 8604.85
6. MT-ATP6 MT-ATP6 976.41 8592.53
7. gga-mir-3533 ENSGALG00000027736 956.80 8419.96 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. CIRBP ENSGALG00000030918 910.57 8013.13 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
9. RPL23A ENSGALG00000003966 893.76 7865.20 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
10. HBG1 HBG1 890.96 7840.56
11. RPS10 ENSGALG00000002813 853.13 7507.65 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
12. RPL15 ENSGALG00000011290 757.87 6669.35 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
13. RPLP1 ENSGALG00000030878 748.07 6583.11 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
14. GAPDH ENSGALG00000014442 739.66 6509.10 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
15. HBZ ENSGALG00000023740 725.65 6385.81 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
16. RPL4 ENSGALG00000007711 680.82 5991.30 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
17. PPIA ENSGALG00000028600 620.59 5461.27 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
18. RPSA 607.98 5350.30 ribosomal protein SA
19. SNRPD1 ENSGALG00000041334 572.96 5042.12 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
20. MDK ENSGALG00000008367 564.55 4968.11 midkine [Source:NCBI gene;Acc:423196]
21. RPS23 ENSGALG00000015617 556.15 4894.19 ribosomal protein S23
22. HBE 526.73 4635.29 hemoglobin subunit epsilon
23. RPS29 ENSGALG00000012229 518.32 4561.28 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
24. RPL29 ENSGALG00000026978 516.92 4548.96 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
25. RPL27A ENSGALG00000005948 512.72 4512.00 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
26. RPS8 ENSGALG00000010124 508.52 4475.04 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
27. RPS21 ENSGALG00000005338 501.51 4413.35 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
28. RPL8 ENSGALG00000016232 481.90 4240.78 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
29. RPL13 ENSGALG00000006179 477.70 4203.82 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
30. RPS15 ENSGALG00000015195 467.89 4117.49 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
31. MT-ND4 MT-ND4 466.49 4105.17
32. RPL19 ENSGALG00000001658 452.48 3981.88 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
33. RPS4 RPS4 452.48 3981.88
34. RPS3A ENSGALG00000010077 449.68 3957.24 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
35. gga-mir-3527 gga-mir-3527 448.28 3944.92
36. MT-CYB MT-CYB 446.88 3932.60
37. RPS12 ENSGALG00000013990 446.88 3932.60 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
38. ENSGALG00000028649 ENSGALG00000028649 435.67 3833.95
39. RPL7A ENSGALG00000003197 435.67 3833.95 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
40. RPS2 ENSGALG00000005490 434.27 3821.63 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
41. RPL12 ENSGALG00000008806 428.67 3772.35 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
42. RPL38 ENSGALG00000001465 424.46 3735.30 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
43. ALDOC ENSGALG00000026077 423.06 3722.98 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
44. RPL27 ENSGALG00000002837 423.06 3722.98 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
45. RPS6 ENSGALG00000015082 417.46 3673.70 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
46. RPS11 ENSGALG00000017299 413.26 3636.74 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
47. RPS15A ENSGALG00000006771 410.46 3612.10 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
48. RPL36 ENSGALG00000000474 393.65 3464.17 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
49. RPL26 RPL26 390.84 3439.44
50. MT-CO1 MT-CO1 383.84 3377.84
51. RPL37 ENSGALG00000014833 378.24 3328.56 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
52. RPS28 ENSGALG00000024398 372.63 3279.19 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
53. RPL32 ENSGALG00000027142 365.63 3217.59 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
54. GNB2L1 ENSGALG00000000122 362.83 3192.95 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
55. RPL21 ENSGALG00000027035 361.43 3180.63 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
56. RPS27A ENSGALG00000036790 361.43 3180.63 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
57. HMGN5 ENSGALG00000007131 360.02 3168.22 high mobility group nucleosome binding domain 5, transcript variant X1
58. RPL35 ENSGALG00000035677 358.62 3155.90 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
59. TXN ENSGALG00000015704 354.42 3118.94 thioredoxin [Source:NCBI gene;Acc:396437]
60. RPS16 ENSGALG00000026490 344.61 3032.61 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
61. RPL24 ENSGALG00000015339 341.81 3007.97 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
62. ANP32B ENSGALG00000037483 337.61 2971.01 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
63. TMSB4X ENSGALG00000026383 336.21 2958.69 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
64. RPS14 ENSGALG00000004588 310.99 2736.75 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
65. PHB2 ENSGALG00000014567 305.39 2687.47 prohibitin 2 [Source:NCBI gene;Acc:771124]
66. RPL18A 298.39 2625.87 ribosomal protein L18a
67. EIF5A2 ENSGALG00000009309 284.38 2502.58 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
68. RPL23 ENSGALG00000001634 284.38 2502.58 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
69. RPL14 ENSGALG00000043379 282.98 2490.26 ribosomal protein L14
70. ENO1 ENSGALG00000002377 280.17 2465.53 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
71. TCEB3 ENSGALG00000034625 280.17 2465.53 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
72. MT-ND3 MT-ND3 278.77 2453.21
73. RPL36AL ENSGALG00000004952 267.57 2354.65 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
74. NME2 ENSGALG00000002932 257.76 2268.32 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
75. RPS7 ENSGALG00000016392 254.96 2243.68 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
76. ENSGALG00000022570 ENSGALG00000022570 252.16 2219.04
77. ATP5G3 246.55 2169.67 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
78. RPL6 ENSGALG00000004818 246.55 2169.67 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
79. HMGN2 HMGN2 245.15 2157.35
80. RPL37A ENSGALG00000011472 240.95 2120.39 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
81. RPL7 ENSGALG00000035252 239.55 2108.07 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
82. RPS20 ENSGALG00000014432 238.15 2095.75 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
83. RPL5 ENSGALG00000005922 235.35 2071.11 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
84. CRHOA CRHOA 233.95 2058.79
85. LDHB ENSGALG00000035836 232.54 2046.38 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
86. UBB ENSGALG00000004509 231.14 2034.06 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
87. EEF1D 229.74 2021.74 eukaryotic translation elongation factor 1 delta, transcript variant X13
88. PRDX1 ENSGALG00000010243 229.74 2021.74 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
89. RAN ENSGALG00000002569 224.14 1972.46 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
90. H3-IX H3-IX 218.54 1923.18
91. RPLP2 ENSGALG00000034811 218.54 1923.18 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
92. SLC25A6_1 ENSGALG00000016691 214.33 1886.13 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
93. ENSGALG00000002696 ENSGALG00000002696 210.13 1849.17
94. MT-ND1 MT-ND1 210.13 1849.17
95. STMN1 ENSGALG00000001475 208.73 1836.85 stathmin 1 [Source:NCBI gene;Acc:396057]
96. RPS13 ENSGALG00000006096 201.73 1775.25 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
97. SET ENSGALG00000004701 200.32 1762.84 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
98. SEC61G ENSGALG00000037863 198.92 1750.52 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
99. RPS25 ENSGALG00000007699 197.52 1738.20 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
100. RPL31 ENSGALG00000016775 194.72 1713.56 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA