Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s46.

Sample reads: 113,692. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4403.15 38730.05
2. RPLP0 ENSGALG00000023294 1157.48 10181.18 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. RPL35A ENSGALG00000007611, ENSGALG00000041230 1119.24 9844.82 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
4. HBG1 HBG1 1094.20 9624.57
5. HBZ ENSGALG00000023740 1045.42 9195.50 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
6. MT-ND5 MT-ND5 1034.87 9102.70
7. gga-mir-3533 ENSGALG00000027736 1017.73 8951.94 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. CIRBP ENSGALG00000030918 995.32 8754.82 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
9. EEF1A EEF1A 959.73 8441.77
10. RPL23A ENSGALG00000003966 943.91 8302.62 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
11. MT-ATP6 MT-ATP6 939.95 8267.79
12. RPS10 ENSGALG00000002813 904.36 7954.74 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
13. RPL4 ENSGALG00000007711 706.61 6215.33 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
14. SNRPD1 ENSGALG00000041334 706.61 6215.33 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
15. HBE 705.30 6203.81 hemoglobin subunit epsilon
16. RPLP1 ENSGALG00000030878 697.39 6134.23 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
17. GAPDH ENSGALG00000014442 663.11 5832.71 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
18. RPL13 ENSGALG00000006179 660.47 5809.49 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
19. MDK ENSGALG00000008367 657.84 5786.35 midkine [Source:NCBI gene;Acc:423196]
20. RPS23 ENSGALG00000015617 657.84 5786.35 ribosomal protein S23
21. RPL15 ENSGALG00000011290 648.61 5705.17 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. RPL27A ENSGALG00000005948 610.38 5368.89 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
23. RPS15 ENSGALG00000015195 590.60 5194.91 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
24. RPS21 ENSGALG00000005338 549.73 4835.42 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
25. RPS3A ENSGALG00000010077 528.64 4649.91 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
26. RPL7A ENSGALG00000003197 523.37 4603.56 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
27. RPSA 482.50 4244.06 ribosomal protein SA
28. RPS15A ENSGALG00000006771 479.86 4220.84 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
29. RPL19 ENSGALG00000001658 477.23 4197.71 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
30. RPL29 ENSGALG00000026978 469.32 4128.13 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
31. RPS4 RPS4 469.32 4128.13
32. MT-ND4 MT-ND4 464.04 4081.69
33. RPS8 ENSGALG00000010124 458.77 4035.33 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
34. RPS12 ENSGALG00000013990 454.82 4000.59 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
35. gga-mir-3527 gga-mir-3527 454.82 4000.59
36. PPIA ENSGALG00000028600 450.86 3965.76 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
37. RPS2 ENSGALG00000005490 448.23 3942.63 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
38. RPL35 ENSGALG00000035677 444.27 3907.79 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
39. RPL27 ENSGALG00000002837 441.63 3884.57 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
40. RPL38 ENSGALG00000001465 441.63 3884.57 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
41. RPL12 ENSGALG00000008806 433.72 3815.00 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
42. RPS29 ENSGALG00000012229 432.41 3803.47 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
43. ALDOC ENSGALG00000026077 431.09 3791.86 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
44. RPL8 ENSGALG00000016232 428.45 3768.64 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
45. MT-CYB MT-CYB 423.18 3722.29
46. TXN ENSGALG00000015704 419.22 3687.45 thioredoxin [Source:NCBI gene;Acc:396437]
47. RAN ENSGALG00000002569 403.40 3548.30 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
48. RPL26 RPL26 398.13 3501.95
49. TMSB4X ENSGALG00000026383 395.49 3478.72 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
50. RPL36 ENSGALG00000000474 377.04 3316.44 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
51. RPS16 ENSGALG00000026490 377.04 3316.44 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
52. GNB2L1 ENSGALG00000000122 375.72 3304.83 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
53. RPS28 ENSGALG00000024398 363.85 3200.42 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
54. ANP32B ENSGALG00000037483 361.22 3177.29 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
55. RPS27A ENSGALG00000036790 359.90 3165.68 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
56. TCEB3 ENSGALG00000034625 348.03 3061.27 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
57. NME2 ENSGALG00000002932 342.76 3014.91 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
58. RPL32 ENSGALG00000027142 338.81 2980.17 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
59. RPL24 ENSGALG00000015339 333.53 2933.73 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
60. RPS6 ENSGALG00000015082 333.53 2933.73 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
61. RPL37 ENSGALG00000014833 330.90 2910.59 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
62. ENSGALG00000028649 ENSGALG00000028649 320.35 2817.79
63. RPL37A ENSGALG00000011472 316.39 2782.96 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
64. RPS11 ENSGALG00000017299 311.12 2736.61 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
65. RPS14 ENSGALG00000004588 308.48 2713.39 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
66. PHB2 ENSGALG00000014567 303.21 2667.03 prohibitin 2 [Source:NCBI gene;Acc:771124]
67. HMGN5 ENSGALG00000007131 293.98 2585.84 high mobility group nucleosome binding domain 5, transcript variant X1
68. MT-CO1 MT-CO1 283.44 2493.13
69. RPL21 ENSGALG00000027035 282.12 2481.52 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
70. UBB ENSGALG00000004509 280.80 2469.91 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
71. RPL14 ENSGALG00000043379 276.84 2435.08 ribosomal protein L14
72. RPL23 ENSGALG00000001634 276.84 2435.08 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
73. PRDX1 ENSGALG00000010243 271.57 2388.73 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
74. MT-ND3 MT-ND3 264.98 2330.76
75. RPL18A 262.34 2307.54 ribosomal protein L18a
76. EIF5A2 ENSGALG00000009309 261.03 2296.02 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
77. ATP5G3 257.07 2261.18 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
78. SFPQ ENSGALG00000002514 253.12 2226.44 splicing factor proline and glutamine rich [Source:HGNC Symbol;Acc:HGNC:10774]
79. SEC61G ENSGALG00000037863 246.52 2168.39 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
80. ENSGALG00000002696 ENSGALG00000002696 245.21 2156.86
81. RPL36AL ENSGALG00000004952 242.57 2133.64 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
82. RPS7 ENSGALG00000016392 241.25 2122.03 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
83. ENO1 ENSGALG00000002377 239.93 2110.42 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
84. RPL6 ENSGALG00000004818 237.30 2087.29 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
85. RPLP2 ENSGALG00000034811 235.98 2075.68 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
86. LDHB ENSGALG00000035836 234.66 2064.07 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
87. HMGN2 HMGN2 233.34 2052.46
88. RPL5 ENSGALG00000005922 232.02 2040.84 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
89. RPS13 ENSGALG00000006096 232.02 2040.84 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
90. ENSGALG00000028992 ENSGALG00000028992 229.39 2017.71
91. RPL7 ENSGALG00000035252 228.07 2006.10 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
92. EEF1D 225.43 1982.88 eukaryotic translation elongation factor 1 delta, transcript variant X13
93. RPL10A ENSGALG00000002644 225.43 1982.88 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
94. RPL31 ENSGALG00000016775 222.79 1959.66 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
95. SSR1 ENSGALG00000012798 222.79 1959.66 signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
96. SLC25A6_1 ENSGALG00000016691 220.16 1936.52 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
97. MT-ND1 MT-ND1 218.84 1924.91
98. RPS25 ENSGALG00000007699 216.20 1901.69 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
99. RPS20 ENSGALG00000014432 214.88 1890.08 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
100. CRHOA CRHOA 212.25 1866.95
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA