Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s45.

Sample reads: 113,639. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4551.72 40056.81
2. EEF1A EEF1A 1207.39 10625.48
3. HBZ ENSGALG00000023740 1204.53 10600.31 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
4. HBG1 HBG1 1138.65 10020.54
5. RPL35A ENSGALG00000007611, ENSGALG00000041230 1105.70 9730.57 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
6. gga-mir-3533 ENSGALG00000027736 1045.55 9201.22 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. CIRBP ENSGALG00000030918 918.08 8079.44 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
8. MT-ND5 MT-ND5 886.57 7802.14
9. MT-ATP6 MT-ATP6 855.06 7524.84
10. HBE 837.87 7373.56 hemoglobin subunit epsilon
11. RPLP0 ENSGALG00000023294 810.66 7134.11 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
12. RPS10 ENSGALG00000002813 809.23 7121.52 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
13. MDK ENSGALG00000008367 779.15 6856.81 midkine [Source:NCBI gene;Acc:423196]
14. RPL4 ENSGALG00000007711 766.26 6743.37 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
15. RPLP1 ENSGALG00000030878 761.96 6705.53 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
16. GAPDH ENSGALG00000014442 730.45 6428.23 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
17. RPL23A ENSGALG00000003966 703.24 6188.77 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
18. RPL15 ENSGALG00000011290 631.63 5558.58 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
19. RPS23 ENSGALG00000015617 614.44 5407.30 ribosomal protein S23
20. RPS21 ENSGALG00000005338 571.47 5029.15 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
21. RPL27A ENSGALG00000005948 545.69 4802.27 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
22. SNRPD1 ENSGALG00000041334 524.21 4613.24 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
23. MT-ND4 MT-ND4 489.83 4310.68
24. RPS8 ENSGALG00000010124 489.83 4310.68 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
25. MT-CYB MT-CYB 475.51 4184.66
26. RPSA 471.21 4146.82 ribosomal protein SA
27. PPIA ENSGALG00000028600 466.92 4109.07 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
28. RPL13 ENSGALG00000006179 466.92 4109.07 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
29. RPL19 ENSGALG00000001658 465.48 4096.39 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
30. RPL38 ENSGALG00000001465 462.62 4071.23 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
31. RPS15 ENSGALG00000015195 448.30 3945.20 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
32. RPL29 ENSGALG00000026978 446.86 3932.53 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
33. RPL7A ENSGALG00000003197 439.70 3869.52 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
34. RPS28 ENSGALG00000024398 436.84 3844.35 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
35. RPL8 ENSGALG00000016232 429.68 3781.34 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
36. RPL26 RPL26 423.95 3730.92
37. gga-mir-3527 gga-mir-3527 422.52 3718.33
38. ENSGALG00000028649 ENSGALG00000028649 419.65 3693.07
39. RPS29 ENSGALG00000012229 419.65 3693.07 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
40. RPL12 ENSGALG00000008806 415.36 3655.32 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
41. RPL27 ENSGALG00000002837 415.36 3655.32 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
42. RPS3A ENSGALG00000010077 412.49 3630.06 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
43. RPS2 ENSGALG00000005490 395.30 3478.79 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
44. RPS4 RPS4 395.30 3478.79
45. RPL32 ENSGALG00000027142 391.01 3441.03 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
46. RPS16 ENSGALG00000026490 391.01 3441.03 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
47. RPS11 ENSGALG00000017299 389.57 3428.36 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
48. GNB2L1 ENSGALG00000000122 388.14 3415.77 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
49. HMGN5 ENSGALG00000007131 385.28 3390.61 high mobility group nucleosome binding domain 5, transcript variant X1
50. RPS15A ENSGALG00000006771 376.68 3314.92 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
51. RPS27A ENSGALG00000036790 375.25 3302.34 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
52. RPS6 ENSGALG00000015082 368.09 3239.33 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
53. MT-CO1 MT-CO1 366.66 3226.74
54. RPS12 ENSGALG00000013990 360.93 3176.32 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
55. NME2 ENSGALG00000002932 353.77 3113.31 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
56. RPL35 ENSGALG00000035677 353.77 3113.31 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
57. RPL36 ENSGALG00000000474 350.90 3088.05 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
58. RPL37 ENSGALG00000014833 350.90 3088.05 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
59. TXN ENSGALG00000015704 350.90 3088.05 thioredoxin [Source:NCBI gene;Acc:396437]
60. RPS20 ENSGALG00000014432 336.58 2962.03 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
61. RPL24 ENSGALG00000015339 320.83 2823.42 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
62. RPS14 ENSGALG00000004588 317.96 2798.16 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
63. RPL21 ENSGALG00000027035 316.53 2785.58 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
64. ANP32B ENSGALG00000037483 306.50 2697.31 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
65. RPL36AL ENSGALG00000004952 285.02 2508.28 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
66. HMGN2 HMGN2 280.72 2470.44
67. PHB2 ENSGALG00000014567 280.72 2470.44 prohibitin 2 [Source:NCBI gene;Acc:771124]
68. ALDOC ENSGALG00000026077 276.43 2432.69 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
69. RPL14 ENSGALG00000043379 269.26 2369.59 ribosomal protein L14
70. ENSGALG00000002696 ENSGALG00000002696 266.40 2344.42
71. RPS7 ENSGALG00000016392 262.10 2306.58 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
72. ENO1 ENSGALG00000002377 257.81 2268.82 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
73. RPL18A 253.51 2230.98 ribosomal protein L18a
74. RPS25 ENSGALG00000007699 253.51 2230.98 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
75. EIF5A2 ENSGALG00000009309 252.08 2218.40 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
76. RPL6 ENSGALG00000004818 250.65 2205.81 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
77. TCEB3 ENSGALG00000034625 249.21 2193.14 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
78. RPL37A ENSGALG00000011472 247.78 2180.56 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
79. RPL5 ENSGALG00000005922 242.05 2130.13 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
80. LDHB ENSGALG00000035836 232.03 2041.95 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
81. RPL7 ENSGALG00000035252 230.59 2029.28 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
82. TMSB4X ENSGALG00000026383 227.73 2004.11 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
83. EEF1D 223.43 1966.27 eukaryotic translation elongation factor 1 delta, transcript variant X13
84. RPS13 ENSGALG00000006096 223.43 1966.27 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
85. RPL23 ENSGALG00000001634 222.00 1953.68 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
86. RAN ENSGALG00000002569 211.97 1865.41 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
87. RPL31 ENSGALG00000016775 211.97 1865.41 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
88. ATP5G3 209.11 1840.24 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
89. ENSGALG00000028992 ENSGALG00000028992 207.68 1827.66
90. MT-ND3 MT-ND3 207.68 1827.66
91. CRHOA CRHOA 206.25 1815.08
92. PRDX1 ENSGALG00000010243 206.25 1815.08 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
93. FKBP4 ENSGALG00000014331 204.81 1802.40 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
94. SET ENSGALG00000004701 204.81 1802.40 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
95. RPL10A ENSGALG00000002644 203.38 1789.82 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
96. STMN1 ENSGALG00000001475 200.52 1764.65 stathmin 1 [Source:NCBI gene;Acc:396057]
97. UBB ENSGALG00000004509 189.06 1663.80 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
98. H3-IX H3-IX 187.63 1651.21
99. SEC61G ENSGALG00000037863 186.19 1638.54 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
100. HNRNPDL ENSGALG00000023199 183.33 1613.37 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA