Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s42.

Sample reads: 113,682. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3532.42 31074.35
2. HBZ ENSGALG00000023740 1266.34 11139.87 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
3. HBG1 HBG1 1151.79 10132.18
4. gga-mir-3533 ENSGALG00000027736 1068.47 9399.23 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
5. RPLP0 ENSGALG00000023294 1040.36 9151.94 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
6. EEF1A EEF1A 1039.32 9142.80
7. CIRBP ENSGALG00000030918 1016.40 8941.17 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
8. RPL35A ENSGALG00000007611, ENSGALG00000041230 1007.03 8858.74 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
9. MT-ND5 MT-ND5 983.08 8648.06
10. MT-ATP6 MT-ATP6 915.39 8052.60
11. RPL23A ENSGALG00000003966 898.73 7906.04 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
12. HBE 823.75 7246.45 hemoglobin subunit epsilon
13. RPS10 ENSGALG00000002813 749.81 6596.00 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
14. RPLP1 ENSGALG00000030878 716.48 6302.80 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
15. GAPDH ENSGALG00000014442 651.92 5734.88 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
16. RPL4 ENSGALG00000007711 647.75 5698.19 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
17. RPL15 ENSGALG00000011290 638.38 5615.77 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
18. MDK ENSGALG00000008367 616.51 5423.38 midkine [Source:NCBI gene;Acc:423196]
19. RPS23 ENSGALG00000015617 597.76 5258.44 ribosomal protein S23
20. SNRPD1 ENSGALG00000041334 590.47 5194.31 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
21. PPIA ENSGALG00000028600 518.62 4562.25 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
22. RPS21 ENSGALG00000005338 514.45 4525.57 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
23. MT-ND4 MT-ND4 508.20 4470.59
24. RPS8 ENSGALG00000010124 505.08 4443.14 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
25. MT-CYB MT-CYB 490.50 4314.88
26. RPL27A ENSGALG00000005948 484.25 4259.90 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
27. RPL13 ENSGALG00000006179 475.92 4186.62 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
28. RPSA 472.79 4159.09 ribosomal protein SA
29. RPS3A ENSGALG00000010077 458.22 4030.92 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
30. RPL7A ENSGALG00000003197 453.01 3985.08 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. RPL19 ENSGALG00000001658 451.97 3975.94 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
32. RPS4 RPS4 444.68 3911.81
33. RPS15 ENSGALG00000015195 430.10 3783.55 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
34. RPL35 ENSGALG00000035677 425.93 3746.86 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
35. RPS29 ENSGALG00000012229 423.85 3728.57 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
36. RPL38 ENSGALG00000001465 422.81 3719.42 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
37. RPL29 ENSGALG00000026978 415.52 3655.29 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
38. RPL27 ENSGALG00000002837 412.39 3627.75 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
39. ALDOC ENSGALG00000026077 401.98 3536.18 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
40. RPS12 ENSGALG00000013990 400.94 3527.03 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
41. RPL26 RPL26 398.86 3508.73
42. RPS15A ENSGALG00000006771 392.61 3453.75 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
43. ENSGALG00000028649 ENSGALG00000028649 387.40 3407.92
44. RPL12 ENSGALG00000008806 386.36 3398.77 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
45. RPS6 ENSGALG00000015082 384.28 3380.47 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
46. gga-mir-3527 gga-mir-3527 382.19 3362.09
47. RPS2 ENSGALG00000005490 373.86 3288.81 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
48. TXN ENSGALG00000015704 366.57 3224.68 thioredoxin [Source:NCBI gene;Acc:396437]
49. RPL8 ENSGALG00000016232 358.24 3151.40 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
50. RPS11 ENSGALG00000017299 353.03 3105.57 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
51. GNB2L1 ENSGALG00000000122 349.91 3078.12 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
52. RPL36 ENSGALG00000000474 349.91 3078.12 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
53. RPS27A ENSGALG00000036790 344.70 3032.29 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
54. RPS16 ENSGALG00000026490 343.66 3023.14 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
55. RPS28 ENSGALG00000024398 329.08 2894.88 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
56. RPL32 ENSGALG00000027142 325.96 2867.44 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
57. MT-CO1 MT-CO1 323.87 2849.05
58. RPL37 ENSGALG00000014833 316.59 2785.01 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
59. TMSB4X ENSGALG00000026383 310.34 2730.03 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
60. ANP32B ENSGALG00000037483 304.09 2675.05 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
61. PHB2 ENSGALG00000014567 304.09 2675.05 prohibitin 2 [Source:NCBI gene;Acc:771124]
62. RAN ENSGALG00000002569 298.88 2629.22 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
63. NME2 ENSGALG00000002932 294.72 2592.62 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
64. RPL14 ENSGALG00000043379 286.38 2519.26 ribosomal protein L14
65. HMGN5 ENSGALG00000007131 282.22 2482.66 high mobility group nucleosome binding domain 5, transcript variant X1
66. ENO1 ENSGALG00000002377 278.05 2445.98 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
67. RPL37A ENSGALG00000011472 278.05 2445.98 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
68. RPL18A 274.93 2418.53 ribosomal protein L18a
69. RPL36AL ENSGALG00000004952 274.93 2418.53 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
70. RPL24 ENSGALG00000015339 268.68 2363.55 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
71. ATP5G3 266.60 2345.25 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
72. RPL21 ENSGALG00000027035 265.56 2336.11 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
73. EIF5A2 ENSGALG00000009309 264.52 2326.96 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
74. TCEB3 ENSGALG00000034625 259.31 2281.12 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
75. RPL6 ENSGALG00000004818 250.98 2207.85 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
76. RPS14 ENSGALG00000004588 246.81 2171.16 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
77. RPL7 ENSGALG00000035252 242.65 2134.57 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
78. RPS20 ENSGALG00000014432 242.65 2134.57 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
79. RPL23 ENSGALG00000001634 241.60 2125.33 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
80. RPS7 ENSGALG00000016392 240.56 2116.18 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
81. SLC25A6_1 ENSGALG00000016691 238.48 2097.89 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
82. ENSGALG00000022570 ENSGALG00000022570 233.27 2052.05
83. UBB ENSGALG00000004509 230.15 2024.61 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
84. HMGN2 HMGN2 227.02 1997.07
85. LDHB ENSGALG00000035836 223.90 1969.63 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
86. STMN1 ENSGALG00000001475 223.90 1969.63 stathmin 1 [Source:NCBI gene;Acc:396057]
87. PRDX1 ENSGALG00000010243 219.74 1933.03 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
88. MT-ND3 MT-ND3 217.65 1914.65
89. HNRNPDL ENSGALG00000023199 216.61 1905.50 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
90. RPS25 ENSGALG00000007699 216.61 1905.50 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
91. RPL10A ENSGALG00000002644 213.49 1878.05 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
92. RPL5 ENSGALG00000005922 207.24 1823.07 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
93. CRHOA CRHOA 203.07 1786.39
94. EEF1D 203.07 1786.39 eukaryotic translation elongation factor 1 delta, transcript variant X13
95. SET ENSGALG00000004701 202.03 1777.24 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
96. SSR1 ENSGALG00000012798 197.87 1740.64 signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
97. EIF4G2 ENSGALG00000005587 196.82 1731.41 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
98. SFPQ ENSGALG00000002514 192.66 1694.81 splicing factor proline and glutamine rich [Source:HGNC Symbol;Acc:HGNC:10774]
99. ENSGALG00000028992 ENSGALG00000028992 191.62 1685.66
100. RPS13 ENSGALG00000006096 191.62 1685.66 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA