Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s40.

Sample reads: 113,738. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4183.02 36780.61
2. HBG1 HBG1 1526.13 13419.01
3. EEF1A EEF1A 1369.30 12040.03
4. HBZ ENSGALG00000023740 1248.05 10973.90 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
5. MT-ATP6 MT-ATP6 1238.83 10892.83
6. RPLP0 ENSGALG00000023294 1238.83 10892.83 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
7. MT-ND5 MT-ND5 1224.33 10765.33
8. HBE 1014.78 8922.79 hemoglobin subunit epsilon
9. RPL35A ENSGALG00000007611, ENSGALG00000041230 1012.15 8899.67 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
10. gga-mir-3533 ENSGALG00000027736 992.38 8725.84 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. CIRBP ENSGALG00000030918 884.31 7775.59 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
12. RPS10 ENSGALG00000002813 776.24 6825.35 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
13. RPLP1 ENSGALG00000030878 767.02 6744.28 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
14. RPL4 ENSGALG00000007711 740.66 6512.50 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
15. RPL23A ENSGALG00000003966 736.71 6477.77 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
16. SNRPD1 ENSGALG00000041334 682.67 6002.61 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
17. GAPDH ENSGALG00000014442 649.72 5712.88 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
18. MDK ENSGALG00000008367 632.59 5562.26 midkine [Source:NCBI gene;Acc:423196]
19. RPL15 ENSGALG00000011290 614.14 5400.03 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
20. RPS23 ENSGALG00000015617 585.15 5145.13 ribosomal protein S23
21. PPIA ENSGALG00000028600 546.93 4809.07 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
22. RPL27A ENSGALG00000005948 542.97 4774.25 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
23. MT-ND4 MT-ND4 536.39 4716.39
24. RPL13 ENSGALG00000006179 508.71 4473.00 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
25. RPSA 503.44 4426.67 ribosomal protein SA
26. MT-CYB MT-CYB 490.26 4310.78
27. RPS8 ENSGALG00000010124 486.31 4276.04 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
28. RPS15 ENSGALG00000015195 484.99 4264.44 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
29. RPS21 ENSGALG00000005338 470.49 4136.94 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
30. RPL29 ENSGALG00000026978 461.27 4055.87 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
31. RPL26 RPL26 458.63 4032.66
32. RPS2 ENSGALG00000005490 458.63 4032.66 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
33. ALDOC ENSGALG00000026077 457.31 4021.05 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
34. RPL7A ENSGALG00000003197 450.72 3963.11 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
35. RPS3A ENSGALG00000010077 441.50 3882.04 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
36. RPS12 ENSGALG00000013990 434.91 3824.09 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
37. RPL19 ENSGALG00000001658 428.32 3766.15 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
38. RPL27 ENSGALG00000002837 427.00 3754.54 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
39. RPS27A ENSGALG00000036790 423.05 3719.81 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
40. RPL35 ENSGALG00000035677 416.46 3661.86 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
41. RPL38 ENSGALG00000001465 415.14 3650.26 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
42. RPL8 ENSGALG00000016232 408.55 3592.31 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
43. GNB2L1 ENSGALG00000000122 405.91 3569.10 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
44. ENSGALG00000028649 ENSGALG00000028649 404.60 3557.58
45. RPS29 ENSGALG00000012229 401.96 3534.37 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
46. RPS16 ENSGALG00000026490 398.01 3499.64 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
47. TXN ENSGALG00000015704 394.05 3464.82 thioredoxin [Source:NCBI gene;Acc:396437]
48. RPS6 ENSGALG00000015082 388.78 3418.48 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
49. RPS4 RPS4 384.83 3383.75
50. RPL12 ENSGALG00000008806 383.51 3372.14 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
51. NME2 ENSGALG00000002932 379.56 3337.41 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
52. RPS15A ENSGALG00000006771 376.92 3314.20 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
53. RPS11 ENSGALG00000017299 375.60 3302.59 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
54. PHB2 ENSGALG00000014567 371.65 3267.86 prohibitin 2 [Source:NCBI gene;Acc:771124]
55. RPL36 ENSGALG00000000474 371.65 3267.86 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
56. RPS28 ENSGALG00000024398 370.33 3256.25 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
57. MT-CO1 MT-CO1 366.38 3221.52
58. gga-mir-3527 gga-mir-3527 363.74 3198.31
59. ANP32B ENSGALG00000037483 336.06 2954.92 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
60. RPS14 ENSGALG00000004588 336.06 2954.92 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
61. RPL37 ENSGALG00000014833 330.79 2908.58 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
62. RPL32 ENSGALG00000027142 316.30 2781.17 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
63. HMGN5 ENSGALG00000007131 309.71 2723.23 high mobility group nucleosome binding domain 5, transcript variant X1
64. TCEB3 ENSGALG00000034625 299.16 2630.47 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
65. RPL7 ENSGALG00000035252 288.62 2537.79 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
66. RPL21 ENSGALG00000027035 287.30 2526.18 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
67. RPL18A 280.71 2468.24 ribosomal protein L18a
68. RPL14 ENSGALG00000043379 276.76 2433.51 ribosomal protein L14
69. RPL37A ENSGALG00000011472 260.94 2294.40 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
70. TMSB4X ENSGALG00000026383 260.94 2294.40 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
71. EIF5A2 ENSGALG00000009309 258.31 2271.28 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
72. RPL6 ENSGALG00000004818 250.40 2201.73 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
73. MT-ND1 MT-ND1 249.08 2190.12
74. UBB ENSGALG00000004509 249.08 2190.12 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
75. RPL24 ENSGALG00000015339 247.77 2178.60 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
76. RAN ENSGALG00000002569 246.45 2166.99 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
77. PRDX1 ENSGALG00000010243 243.81 2143.78 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
78. ENSGALG00000002696 ENSGALG00000002696 242.49 2132.17
79. RPL23 ENSGALG00000001634 242.49 2132.17 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
80. MT-ND3 MT-ND3 238.54 2097.44
81. RPL10A ENSGALG00000002644 237.22 2085.84 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
82. RPS20 ENSGALG00000014432 231.95 2039.50 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
83. RPS7 ENSGALG00000016392 222.73 1958.43 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
84. ATP5G3 221.41 1946.82 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
85. ENSGALG00000028992 ENSGALG00000028992 221.41 1946.82
86. SEC61G ENSGALG00000037863 221.41 1946.82 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
87. RPS25 ENSGALG00000007699 218.77 1923.61 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
88. RPL36AL ENSGALG00000004952 217.45 1912.00 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
89. STMN1 ENSGALG00000001475 217.45 1912.00 stathmin 1 [Source:NCBI gene;Acc:396057]
90. NDUFB9 ENSGALG00000042242 214.82 1888.88 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
91. RPL5 ENSGALG00000005922 214.82 1888.88 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
92. ENO1 ENSGALG00000002377 212.18 1865.66 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
93. EEF1D 209.55 1842.54 eukaryotic translation elongation factor 1 delta, transcript variant X13
94. FTH FTH 204.27 1796.11
95. HMGN2 HMGN2 202.96 1784.59
96. LDHB ENSGALG00000035836 201.64 1772.99 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
97. SLC25A6_1 ENSGALG00000016691 201.64 1772.99 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
98. HSPA8 ENSGALG00000006512 199.00 1749.77 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
99. SET ENSGALG00000004701 193.73 1703.44 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
100. RPS17 ENSGALG00000002157 191.10 1680.31 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA