Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s39.

Sample reads: 113,716. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4230.06 37199.67
2. MT-ATP6 MT-ATP6 1335.15 11741.47
3. MT-ND5 MT-ND5 1314.15 11556.80
4. EEF1A EEF1A 1110.52 9766.05
5. HBG1 HBG1 1097.93 9655.33
6. RPLP0 ENSGALG00000023294 1039.15 9138.41 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
7. gga-mir-3533 ENSGALG00000027736 992.96 8732.21 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. CIRBP ENSGALG00000030918 938.38 8252.23 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
9. HBZ ENSGALG00000023740 881.70 7753.78 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
10. RPL35A ENSGALG00000007611, ENSGALG00000041230 795.63 6996.87 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
11. RPLP1 ENSGALG00000030878 717.96 6313.83 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
12. RPL23A ENSGALG00000003966 711.66 6258.43 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
13. GAPDH ENSGALG00000014442 696.96 6129.15 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
14. HBE 694.86 6110.69 hemoglobin subunit epsilon
15. RPS10 ENSGALG00000002813 692.76 6092.22 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
16. RPL15 ENSGALG00000011290 675.97 5944.56 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
17. RPL4 ENSGALG00000007711 625.59 5501.52 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
18. RPS23 ENSGALG00000015617 610.89 5372.24 ribosomal protein S23
19. RPL29 ENSGALG00000026978 566.81 4984.60 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
20. RPS11 ENSGALG00000017299 550.01 4836.86 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
21. RPL27A ENSGALG00000005948 541.62 4763.07 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
22. RPL8 ENSGALG00000016232 541.62 4763.07 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
23. RPSA 510.13 4486.15 ribosomal protein SA
24. GNB2L1 ENSGALG00000000122 497.53 4375.34 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
25. RPL38 ENSGALG00000001465 497.53 4375.34 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
26. PPIA ENSGALG00000028600 495.43 4356.87 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
27. ENSGALG00000018384 ENSGALG00000018384 487.03 4283.00
28. MT-CYB MT-CYB 484.94 4264.62
29. RPS6 ENSGALG00000015082 474.44 4172.28 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
30. RPS21 ENSGALG00000005338 468.14 4116.88 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
31. MT-ND4 MT-ND4 451.35 3969.23
32. RPS29 ENSGALG00000012229 451.35 3969.23 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
33. RPS12 ENSGALG00000013990 447.15 3932.29 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
34. gga-mir-3527 gga-mir-3527 445.05 3913.82
35. MDK ENSGALG00000008367 440.85 3876.89 midkine [Source:NCBI gene;Acc:423196]
36. RPL35 ENSGALG00000035677 430.35 3784.55 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
37. RPS2 ENSGALG00000005490 426.16 3747.70 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
38. RPL19 ENSGALG00000001658 424.06 3729.24 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
39. ALDOC ENSGALG00000026077 419.86 3692.30 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
40. SNRPD1 ENSGALG00000041334 417.76 3673.83 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
41. NME2 ENSGALG00000002932 411.46 3618.43 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
42. RPL7A ENSGALG00000003197 411.46 3618.43 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
43. RPL13 ENSGALG00000006179 407.26 3581.50 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
44. RPS4 RPS4 390.47 3433.84
45. RPS8 ENSGALG00000010124 386.27 3396.91 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
46. HMGN5 ENSGALG00000007131 377.87 3323.04 high mobility group nucleosome binding domain 5, transcript variant X1
47. RPL12 ENSGALG00000008806 367.38 3230.79 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
48. RPS27A ENSGALG00000036790 363.18 3193.85 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
49. RPL27 ENSGALG00000002837 352.68 3101.51 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
50. RPL37A ENSGALG00000011472 352.68 3101.51 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
51. RPL32 ENSGALG00000027142 350.58 3083.04 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
52. RPS16 ENSGALG00000026490 350.58 3083.04 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
53. MT-CO1 MT-CO1 346.38 3046.11
54. RPS15A ENSGALG00000006771 342.18 3009.17 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
55. RPS28 ENSGALG00000024398 337.99 2972.33 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
56. RPS15 ENSGALG00000015195 335.89 2953.86 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
57. RPS3A ENSGALG00000010077 333.79 2935.39 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
58. EIF5A2 ENSGALG00000009309 331.69 2916.92 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
59. ENSGALG00000028649 ENSGALG00000028649 329.59 2898.46
60. RPL6 ENSGALG00000004818 321.19 2824.58 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
61. TXN ENSGALG00000015704 321.19 2824.58 thioredoxin [Source:NCBI gene;Acc:396437]
62. RPL21 ENSGALG00000027035 319.09 2806.12 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
63. RPL37 ENSGALG00000014833 310.69 2732.25 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
64. RPL26 RPL26 304.40 2676.93
65. RPS14 ENSGALG00000004588 298.10 2621.53 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
66. RPL36 ENSGALG00000000474 272.91 2400.00 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
67. TCEB3 ENSGALG00000034625 268.71 2363.07 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
68. RPL14 ENSGALG00000043379 266.61 2344.60 ribosomal protein L14
69. RPS25 ENSGALG00000007699 264.51 2326.13 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
70. HMGN2 HMGN2 258.21 2270.73
71. ENO1 ENSGALG00000002377 256.11 2252.26 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
72. CRHOA CRHOA 247.72 2178.48
73. TMSB4X ENSGALG00000026383 247.72 2178.48 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
74. H3-IX H3-IX 243.52 2141.55
75. PHB2 ENSGALG00000014567 243.52 2141.55 prohibitin 2 [Source:NCBI gene;Acc:771124]
76. LDHB ENSGALG00000035836 241.42 2123.08 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
77. RPL24 ENSGALG00000015339 239.32 2104.61 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
78. RAN ENSGALG00000002569 237.22 2086.14 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
79. RPL23 ENSGALG00000001634 237.22 2086.14 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
80. ANP32B ENSGALG00000037483 235.12 2067.67 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
81. RPL36AL ENSGALG00000004952 235.12 2067.67 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
82. MT-ND1 MT-ND1 228.82 2012.27
83. ATP5G3 222.52 1956.87 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
84. PRDX1 ENSGALG00000010243 222.52 1956.87 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
85. EEF1D 220.43 1938.49 eukaryotic translation elongation factor 1 delta, transcript variant X13
86. MT-ND3 MT-ND3 218.33 1920.02
87. RPLP2 ENSGALG00000034811 216.23 1901.55 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
88. RPL18A 207.83 1827.68 ribosomal protein L18a
89. RPS20 ENSGALG00000014432 207.83 1827.68 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
90. UBB ENSGALG00000004509 207.83 1827.68 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
91. ENSGALG00000028992 ENSGALG00000028992 205.73 1809.22
92. RPS7 ENSGALG00000016392 205.73 1809.22 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
93. EIF1 ENSGALG00000028517 199.43 1753.81 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
94. RPS17 ENSGALG00000002157 197.33 1735.34 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
95. STMN1 ENSGALG00000001475 197.33 1735.34 stathmin 1 [Source:NCBI gene;Acc:396057]
96. SET ENSGALG00000004701 191.04 1680.03 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
97. ENSGALG00000018386 ENSGALG00000018386 186.84 1643.09
98. RPL7 ENSGALG00000035252 186.84 1643.09 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
99. HNRNPDL ENSGALG00000023199 184.74 1624.63 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
100. PNRC1 ENSGALG00000015780 184.74 1624.63 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA