Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s38.

Sample reads: 113,579. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4411.73 38844.79
2. EEF1A EEF1A 1429.67 12588.09
3. MT-ATP6 MT-ATP6 1020.64 8986.62
4. HBG1 HBG1 1018.69 8969.45
5. RPS10 ENSGALG00000002813 981.68 8643.58 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
6. gga-mir-3533 ENSGALG00000027736 981.68 8643.58 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. RPLP0 ENSGALG00000023294 962.21 8472.15 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
8. HBZ ENSGALG00000023740 958.31 8437.81 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
9. CIRBP ENSGALG00000030918 907.67 7991.93 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
10. GAPDH ENSGALG00000014442 899.88 7923.34 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. MT-ND5 MT-ND5 765.48 6739.97
12. RPL15 ENSGALG00000011290 765.48 6739.97 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
13. RPL35A ENSGALG00000007611, ENSGALG00000041230 707.05 6225.50 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
14. RPLP1 ENSGALG00000030878 695.36 6122.57 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
15. RPS8 ENSGALG00000010124 687.57 6053.98 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
16. HBE 685.62 6036.81 hemoglobin subunit epsilon
17. RPL23A ENSGALG00000003966 685.62 6036.81 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
18. MDK ENSGALG00000008367 670.04 5899.63 midkine [Source:NCBI gene;Acc:423196]
19. RPS23 ENSGALG00000015617 619.40 5453.75 ribosomal protein S23
20. RPL4 ENSGALG00000007711 580.44 5110.71 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
21. PPIA ENSGALG00000028600 555.12 4887.77 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
22. RPL27A ENSGALG00000005948 549.28 4836.35 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
23. RPL29 ENSGALG00000026978 529.80 4664.83 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
24. RPS11 ENSGALG00000017299 510.32 4493.31 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
25. RPSA 506.42 4458.97 ribosomal protein SA
26. RPS12 ENSGALG00000013990 498.63 4390.38 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
27. RPS6 ENSGALG00000015082 471.36 4150.27 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
28. GNB2L1 ENSGALG00000000122 465.52 4098.85 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
29. RPS2 ENSGALG00000005490 463.57 4081.68 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
30. SNRPD1 ENSGALG00000041334 455.78 4013.09 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
31. RPL13 ENSGALG00000006179 447.99 3944.50 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
32. RPL19 ENSGALG00000001658 442.15 3893.08 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
33. RPL35 ENSGALG00000035677 440.20 3875.91 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
34. RPS27A ENSGALG00000036790 438.25 3858.74 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
35. MT-CYB MT-CYB 436.30 3841.57
36. RPS21 ENSGALG00000005338 436.30 3841.57 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
37. RPS29 ENSGALG00000012229 436.30 3841.57 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
38. RPL38 ENSGALG00000001465 426.57 3755.90 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
39. RPL26 RPL26 424.62 3738.73
40. RPL8 ENSGALG00000016232 424.62 3738.73 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
41. gga-mir-3527 gga-mir-3527 422.67 3721.56
42. RPS15 ENSGALG00000015195 416.83 3670.14 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
43. RPL36 ENSGALG00000000474 409.03 3601.46 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
44. RPL32 ENSGALG00000027142 407.09 3584.38 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
45. RPL7A ENSGALG00000003197 403.19 3550.04 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
46. RPL21 ENSGALG00000027035 391.50 3447.11 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
47. RPS15A ENSGALG00000006771 389.56 3430.03 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
48. RPL12 ENSGALG00000008806 387.61 3412.86 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
49. HMGN5 ENSGALG00000007131 385.66 3395.69 high mobility group nucleosome binding domain 5, transcript variant X1
50. ALDOC ENSGALG00000026077 383.71 3378.52 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
51. RPL27 ENSGALG00000002837 377.87 3327.10 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
52. RPS28 ENSGALG00000024398 375.92 3309.93 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
53. RPS3A ENSGALG00000010077 370.08 3258.51 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
54. MT-ND4 MT-ND4 360.34 3172.75
55. RPL24 ENSGALG00000015339 338.91 2984.07 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
56. RPL6 ENSGALG00000004818 336.97 2966.98 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
57. ENSGALG00000028649 ENSGALG00000028649 327.23 2881.22
58. NME2 ENSGALG00000002932 327.23 2881.22 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
59. RPL37 ENSGALG00000014833 321.38 2829.72 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
60. TXN ENSGALG00000015704 319.44 2812.63 thioredoxin [Source:NCBI gene;Acc:396437]
61. RPS16 ENSGALG00000026490 315.54 2778.29 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
62. RPL37A ENSGALG00000011472 313.59 2761.13 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
63. RPS25 ENSGALG00000007699 307.75 2709.70 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
64. RPL14 ENSGALG00000043379 301.91 2658.28 ribosomal protein L14
65. RPL36AL ENSGALG00000004952 298.01 2623.95 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
66. RPL18A 294.12 2589.69 ribosomal protein L18a
67. RPS4 RPS4 290.22 2555.36
68. RPS20 ENSGALG00000014432 288.27 2538.19 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
69. PHB2 ENSGALG00000014567 286.32 2521.02 prohibitin 2 [Source:NCBI gene;Acc:771124]
70. MT-CO1 MT-CO1 284.38 2503.93
71. RPS14 ENSGALG00000004588 274.64 2418.17 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
72. ENO1 ENSGALG00000002377 272.69 2401.01 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
73. TCEB3 ENSGALG00000034625 272.69 2401.01 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
74. EEF1D 268.79 2366.67 eukaryotic translation elongation factor 1 delta, transcript variant X13
75. EIF5A2 ENSGALG00000009309 257.11 2263.83 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
76. RPL23 ENSGALG00000001634 253.21 2229.49 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
77. RPS7 ENSGALG00000016392 249.32 2195.24 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
78. ATP5G3 243.47 2143.73 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
79. PRDX1 ENSGALG00000010243 243.47 2143.73 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
80. ANP32B ENSGALG00000037483 241.53 2126.64 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
81. ENSGALG00000002696 ENSGALG00000002696 241.53 2126.64
82. RPL5 ENSGALG00000005922 237.63 2092.31 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
83. SLC25A6_1 ENSGALG00000016691 237.63 2092.31 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
84. STMN1 ENSGALG00000001475 237.63 2092.31 stathmin 1 [Source:NCBI gene;Acc:396057]
85. MT-ND3 MT-ND3 231.79 2040.89
86. LDHB ENSGALG00000035836 225.94 1989.38 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
87. RPL7 ENSGALG00000035252 225.94 1989.38 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
88. HMGN2 HMGN2 224.00 1972.30
89. UBB ENSGALG00000004509 222.05 1955.13 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
90. RPL10A ENSGALG00000002644 220.10 1937.96 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
91. ENSGALG00000018384 ENSGALG00000018384 214.26 1886.54
92. ENSGALG00000028992 ENSGALG00000028992 214.26 1886.54
93. CRHOA CRHOA 212.31 1869.37
94. TMSB4X ENSGALG00000026383 208.41 1835.03 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
95. H3-IX H3-IX 200.62 1766.44
96. MT-ND1 MT-ND1 192.83 1697.85
97. RPS13 ENSGALG00000006096 190.88 1680.68 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
98. RPS17 ENSGALG00000002157 190.88 1680.68 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
99. PNRC1 ENSGALG00000015780 183.09 1612.09 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
100. RAN ENSGALG00000002569 177.25 1560.67 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA